EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0262601 (Gene tree)
Gene ID: 34426
Gene Symbol: SmB
Alias: -
Full Name: Small ribonucleoprotein particle protein SmB
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Minus strand
Length: 1145 bases
Position: chr2L:10425483-10426627
Accession: FBgn0262601
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0293061	LSM	PF01423.22	4.5e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0304118	-	776	-	FBpp0293061	199 (aa)	-	Q05856

Gene Model

Click here to download FBgn0262601's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0262601's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0262601	SmB	74	70.470	ENSG00000125835	SNRPB	76	71.698	Homo_sapiens
FBgn0262601	SmB	90	62.637	ENSAPOG00000019606	snrpb	63	62.437	Acanthochromis_polyacanthus
FBgn0262601	SmB	73	70.270	ENSAMEG00000011353	SNRPB	61	70.270	Ailuropoda_melanoleuca
FBgn0262601	SmB	71	69.231	ENSACIG00000014480	snrpb	79	62.304	Amphilophus_citrinellus
FBgn0262601	SmB	74	69.128	ENSAOCG00000006876	snrpb	77	62.437	Amphiprion_ocellaris
FBgn0262601	SmB	74	69.128	ENSAPEG00000021585	snrpb	89	58.291	Amphiprion_percula
FBgn0262601	SmB	74	69.128	ENSATEG00000009836	snrpb	77	62.437	Anabas_testudineus
FBgn0262601	SmB	70	70.213	ENSACAG00000002053	SNRPB	61	70.213	Anolis_carolinensis
FBgn0262601	SmB	74	70.470	ENSANAG00000024443	-	65	70.470	Aotus_nancymaae
FBgn0262601	SmB	74	65.101	ENSANAG00000036271	-	74	59.016	Aotus_nancymaae
FBgn0262601	SmB	74	69.128	ENSACLG00000014707	snrpb	77	62.437	Astatotilapia_calliptera
FBgn0262601	SmB	74	69.128	ENSAMXG00000029434	snrpb	76	63.536	Astyanax_mexicanus
FBgn0262601	SmB	98	59.091	ENSBTAG00000001038	SNRPB	76	63.388	Bos_taurus
FBgn0262601	SmB	74	70.470	ENSCJAG00000020971	-	65	70.470	Callithrix_jacchus
FBgn0262601	SmB	74	66.443	ENSCJAG00000023097	-	62	66.443	Callithrix_jacchus
FBgn0262601	SmB	74	70.470	ENSCAFG00000006693	-	65	70.470	Canis_familiaris
FBgn0262601	SmB	71	62.069	ENSCAFG00000031109	-	62	62.000	Canis_familiaris
FBgn0262601	SmB	74	70.470	ENSCAFG00020016981	-	62	70.470	Canis_lupus_dingo
FBgn0262601	SmB	74	70.470	ENSCHIG00000025449	-	65	70.470	Capra_hircus
FBgn0262601	SmB	74	70.470	ENSTSYG00000014498	-	65	70.470	Carlito_syrichta
FBgn0262601	SmB	89	55.249	ENSTSYG00000032303	-	67	54.971	Carlito_syrichta
FBgn0262601	SmB	73	70.270	ENSCAPG00000012669	SNRPB	64	70.270	Cavia_aperea
FBgn0262601	SmB	74	70.470	ENSCPOG00000039408	SNRPB	65	70.470	Cavia_porcellus
FBgn0262601	SmB	74	70.470	ENSCCAG00000026002	SNRPB	65	70.470	Cebus_capucinus
FBgn0262601	SmB	88	53.107	ENSCCAG00000035140	-	89	68.627	Cebus_capucinus
FBgn0262601	SmB	74	70.470	ENSCATG00000030230	SNRPB	65	70.470	Cercocebus_atys
FBgn0262601	SmB	74	70.470	ENSCLAG00000012442	SNRPB	63	70.470	Chinchilla_lanigera
FBgn0262601	SmB	74	70.470	ENSCSAG00000010840	SNRPB	65	70.470	Chlorocebus_sabaeus
FBgn0262601	SmB	74	70.470	ENSCPBG00000026801	SNRPB	65	70.470	Chrysemys_picta_bellii
FBgn0262601	SmB	74	70.470	ENSCANG00000019461	SNRPB	65	70.470	Colobus_angolensis_palliatus
FBgn0262601	SmB	74	70.470	ENSCGRG00001023046	Snrpb	65	70.470	Cricetulus_griseus_chok1gshd
FBgn0262601	SmB	71	70.139	ENSCGRG00000010423	Snrpb	63	70.922	Cricetulus_griseus_crigri
FBgn0262601	SmB	74	69.128	ENSCSEG00000020328	snrpb	77	62.437	Cynoglossus_semilaevis
FBgn0262601	SmB	74	69.799	ENSDARG00000011125	snrpb	62	69.799	Danio_rerio
FBgn0262601	SmB	74	64.430	ENSDNOG00000007896	-	61	64.430	Dasypus_novemcinctus
FBgn0262601	SmB	74	70.470	ENSDNOG00000015545	-	62	70.470	Dasypus_novemcinctus
FBgn0262601	SmB	71	70.629	ENSDORG00000029558	Snrpb	62	70.629	Dipodomys_ordii
FBgn0262601	SmB	78	66.456	ENSEBUG00000007467	SNRPB	66	67.722	Eptatretus_burgeri
FBgn0262601	SmB	74	71.141	ENSEASG00005012991	SNRPB	65	71.141	Equus_asinus_asinus
FBgn0262601	SmB	74	70.470	ENSECAG00000011944	SNRPB	65	70.470	Equus_caballus
FBgn0262601	SmB	74	70.470	ENSEEUG00000015568	SNRPB	52	70.470	Erinaceus_europaeus
FBgn0262601	SmB	71	69.444	ENSELUG00000014564	snrpb	67	67.550	Esox_lucius
FBgn0262601	SmB	74	70.470	ENSFCAG00000034090	-	65	70.470	Felis_catus
FBgn0262601	SmB	70	70.922	ENSFALG00000004866	SNRPB	61	70.922	Ficedula_albicollis
FBgn0262601	SmB	74	70.470	ENSFDAG00000009937	SNRPB	65	70.470	Fukomys_damarensis
FBgn0262601	SmB	74	70.470	ENSGALG00000035421	SNRPN	62	70.470	Gallus_gallus
FBgn0262601	SmB	73	68.919	ENSGAFG00000019558	snrpb	68	67.308	Gambusia_affinis
FBgn0262601	SmB	74	69.128	ENSGACG00000003262	snrpb	66	67.516	Gasterosteus_aculeatus
FBgn0262601	SmB	74	70.470	ENSGAGG00000001308	SNRPB	62	70.470	Gopherus_agassizii
FBgn0262601	SmB	74	70.470	ENSGGOG00000016138	SNRPB	65	70.470	Gorilla_gorilla
FBgn0262601	SmB	74	69.128	ENSHBUG00000008369	snrpb	77	62.437	Haplochromis_burtoni
FBgn0262601	SmB	74	70.470	ENSHGLG00000016241	-	65	70.470	Heterocephalus_glaber_female
FBgn0262601	SmB	74	63.265	ENSHGLG00000016505	-	72	63.265	Heterocephalus_glaber_female
FBgn0262601	SmB	74	63.265	ENSHGLG00100004178	-	72	63.265	Heterocephalus_glaber_male
FBgn0262601	SmB	74	70.470	ENSHGLG00100012877	-	65	70.470	Heterocephalus_glaber_male
FBgn0262601	SmB	74	69.128	ENSHCOG00000014888	snrpb	77	62.437	Hippocampus_comes
FBgn0262601	SmB	74	69.799	ENSIPUG00000024569	SNRPB	63	69.799	Ictalurus_punctatus
FBgn0262601	SmB	74	66.000	ENSSTOG00000027821	-	64	68.750	Ictidomys_tridecemlineatus
FBgn0262601	SmB	74	68.456	ENSSTOG00000033664	-	62	68.456	Ictidomys_tridecemlineatus
FBgn0262601	SmB	74	70.470	ENSJJAG00000024170	Snrpb	65	70.470	Jaculus_jaculus
FBgn0262601	SmB	74	69.799	ENSKMAG00000014494	snrpb	75	62.437	Kryptolebias_marmoratus
FBgn0262601	SmB	74	69.128	ENSLBEG00000005678	snrpb	77	62.437	Labrus_bergylta
FBgn0262601	SmB	74	69.128	ENSLACG00000011459	SNRPB	62	69.128	Latimeria_chalumnae
FBgn0262601	SmB	74	69.799	ENSLOCG00000002687	snrpb	63	69.799	Lepisosteus_oculatus
FBgn0262601	SmB	73	67.568	ENSLAFG00000017588	SNRPB	63	67.568	Loxodonta_africana
FBgn0262601	SmB	74	70.470	ENSMFAG00000038756	SNRPB	65	70.470	Macaca_fascicularis
FBgn0262601	SmB	74	70.470	ENSMMUG00000010050	SNRPB	74	62.088	Macaca_mulatta
FBgn0262601	SmB	74	70.470	ENSMNEG00000027954	SNRPB	65	70.470	Macaca_nemestrina
FBgn0262601	SmB	74	70.470	ENSMLEG00000022346	SNRPB	65	70.470	Mandrillus_leucophaeus
FBgn0262601	SmB	73	68.919	ENSMAMG00000009294	snrpb	74	62.245	Mastacembelus_armatus
FBgn0262601	SmB	74	69.128	ENSMZEG00005011856	snrpb	77	62.437	Maylandia_zebra
FBgn0262601	SmB	74	70.470	ENSMICG00000016519	SNRPB	65	70.470	Microcebus_murinus
FBgn0262601	SmB	74	62.416	ENSMICG00000015983	-	84	56.831	Microcebus_murinus
FBgn0262601	SmB	74	69.799	ENSMOCG00000002892	-	65	69.799	Microtus_ochrogaster
FBgn0262601	SmB	69	58.993	ENSMOCG00000021362	-	79	51.913	Microtus_ochrogaster
FBgn0262601	SmB	73	68.919	ENSMMOG00000013226	snrpb	79	62.245	Mola_mola
FBgn0262601	SmB	90	62.637	ENSMALG00000020839	snrpb	62	62.437	Monopterus_albus
FBgn0262601	SmB	74	70.470	MGP_CAROLIEiJ_G0024293	Snrpb	76	71.698	Mus_caroli
FBgn0262601	SmB	74	70.470	ENSMUSG00000027404	Snrpb	76	71.698	Mus_musculus
FBgn0262601	SmB	74	70.470	MGP_PahariEiJ_G0025738	Snrpb	76	71.698	Mus_pahari
FBgn0262601	SmB	74	70.470	MGP_SPRETEiJ_G0025213	Snrpb	76	70.370	Mus_spretus
FBgn0262601	SmB	74	70.470	ENSMPUG00000009283	SNRPB	65	70.470	Mustela_putorius_furo
FBgn0262601	SmB	74	67.114	ENSMLUG00000016951	SNRPB	61	67.114	Myotis_lucifugus
FBgn0262601	SmB	74	70.470	ENSNGAG00000012051	Snrpb	65	70.470	Nannospalax_galili
FBgn0262601	SmB	74	67.114	ENSNBRG00000006353	snrpb	70	60.914	Neolamprologus_brichardi
FBgn0262601	SmB	74	70.470	ENSNLEG00000029067	SNRPB	62	70.470	Nomascus_leucogenys
FBgn0262601	SmB	73	70.270	ENSMEUG00000015625	SNRPB	66	70.270	Notamacropus_eugenii
FBgn0262601	SmB	74	70.470	ENSODEG00000004305	-	65	70.470	Octodon_degus
FBgn0262601	SmB	74	69.388	ENSODEG00000016060	-	62	69.388	Octodon_degus
FBgn0262601	SmB	74	69.128	ENSONIG00000000248	snrpb	77	62.437	Oreochromis_niloticus
FBgn0262601	SmB	74	67.114	ENSOCUG00000022423	-	76	65.101	Oryctolagus_cuniculus
FBgn0262601	SmB	74	67.785	ENSOCUG00000021456	-	62	67.785	Oryctolagus_cuniculus
FBgn0262601	SmB	74	68.456	ENSOCUG00000028215	-	62	68.456	Oryctolagus_cuniculus
FBgn0262601	SmB	72	52.055	ENSOCUG00000026813	-	63	51.701	Oryctolagus_cuniculus
FBgn0262601	SmB	74	70.470	ENSOCUG00000014042	-	62	70.470	Oryctolagus_cuniculus
FBgn0262601	SmB	95	59.162	ENSORLG00000021862	snrpb	77	62.437	Oryzias_latipes
FBgn0262601	SmB	74	70.470	ENSOGAG00000016149	SNRPB	62	70.470	Otolemur_garnettii
FBgn0262601	SmB	74	70.470	ENSOARG00000006740	SNRPB	65	70.470	Ovis_aries
FBgn0262601	SmB	74	70.470	ENSPPAG00000036314	SNRPB	65	70.470	Pan_paniscus
FBgn0262601	SmB	74	70.470	ENSPPRG00000003233	-	65	70.470	Panthera_pardus
FBgn0262601	SmB	73	70.270	ENSPTIG00000007468	SNRPB	64	70.270	Panthera_tigris_altaica
FBgn0262601	SmB	74	70.470	ENSPTRG00000013176	SNRPB	65	70.470	Pan_troglodytes
FBgn0262601	SmB	74	70.470	ENSPANG00000020362	SNRPB	62	70.470	Papio_anubis
FBgn0262601	SmB	74	69.799	ENSPKIG00000002865	snrpb	76	64.088	Paramormyrops_kingsleyae
FBgn0262601	SmB	73	70.270	ENSPSIG00000014125	SNRPB	61	70.270	Pelodiscus_sinensis
FBgn0262601	SmB	88	61.582	ENSPMGG00000016349	snrpb	62	68.750	Periophthalmus_magnuspinnatus
FBgn0262601	SmB	74	70.470	ENSPEMG00000007948	Snrpb	65	70.470	Peromyscus_maniculatus_bairdii
FBgn0262601	SmB	73	70.270	ENSPCIG00000004694	SNRPB	61	70.270	Phascolarctos_cinereus
FBgn0262601	SmB	73	68.919	ENSPFOG00000011802	snrpb	66	67.308	Poecilia_formosa
FBgn0262601	SmB	75	65.359	ENSPLAG00000014130	snrpb	58	70.149	Poecilia_latipinna
FBgn0262601	SmB	66	70.149	ENSPREG00000015515	snrpb	62	70.149	Poecilia_reticulata
FBgn0262601	SmB	74	70.470	ENSPPYG00000010841	SNRPB	65	70.470	Pongo_abelii
FBgn0262601	SmB	74	70.470	ENSPCOG00000013686	SNRPB	65	70.470	Propithecus_coquereli
FBgn0262601	SmB	74	69.128	ENSPVAG00000017013	SNRPB	52	69.128	Pteropus_vampyrus
FBgn0262601	SmB	74	69.128	ENSPNYG00000014788	snrpb	77	62.437	Pundamilia_nyererei
FBgn0262601	SmB	74	69.799	ENSPNAG00000016126	snrpb	76	64.088	Pygocentrus_nattereri
FBgn0262601	SmB	74	70.470	ENSRNOG00000006961	Snrpb	76	70.370	Rattus_norvegicus
FBgn0262601	SmB	74	70.470	ENSRBIG00000040505	SNRPB	65	70.470	Rhinopithecus_bieti
FBgn0262601	SmB	74	70.470	ENSRROG00000036094	SNRPB	65	70.470	Rhinopithecus_roxellana
FBgn0262601	SmB	74	70.470	ENSSBOG00000027310	SNRPB	65	70.470	Saimiri_boliviensis_boliviensis
FBgn0262601	SmB	74	70.470	ENSSHAG00000010394	SNRPB	62	70.470	Sarcophilus_harrisii
FBgn0262601	SmB	74	69.128	ENSSFOG00015002870	snrpb	75	63.277	Scleropages_formosus
FBgn0262601	SmB	74	69.128	ENSSMAG00000006766	snrpb	77	62.437	Scophthalmus_maximus
FBgn0262601	SmB	74	69.128	ENSSDUG00000018539	snrpb	77	62.437	Seriola_dumerili
FBgn0262601	SmB	74	69.128	ENSSLDG00000022391	snrpb	77	62.437	Seriola_lalandi_dorsalis
FBgn0262601	SmB	73	56.081	ENSSARG00000003084	SNRPB	63	56.081	Sorex_araneus
FBgn0262601	SmB	73	70.270	ENSSPUG00000015659	SNRPB	62	70.270	Sphenodon_punctatus
FBgn0262601	SmB	74	69.128	ENSSPAG00000021992	snrpb	77	62.437	Stegastes_partitus
FBgn0262601	SmB	74	70.470	ENSSSCG00000040857	-	65	70.470	Sus_scrofa
FBgn0262601	SmB	73	52.703	ENSSSCG00000011966	-	77	48.634	Sus_scrofa
FBgn0262601	SmB	69	71.223	ENSTGUG00000005684	SNRPB	58	71.223	Taeniopygia_guttata
FBgn0262601	SmB	73	69.388	ENSTRUG00000023094	snrpb	80	62.437	Takifugu_rubripes
FBgn0262601	SmB	73	69.388	ENSTNIG00000002991	snrpb	77	62.437	Tetraodon_nigroviridis
FBgn0262601	SmB	74	70.470	ENSUAMG00000005984	-	88	63.388	Ursus_americanus
FBgn0262601	SmB	67	70.588	ENSUMAG00000002123	-	63	70.588	Ursus_maritimus
FBgn0262601	SmB	74	57.143	ENSVVUG00000010086	-	90	49.524	Vulpes_vulpes
FBgn0262601	SmB	74	70.470	ENSVVUG00000025654	-	62	70.470	Vulpes_vulpes
FBgn0262601	SmB	73	70.946	ENSXETG00000027266	snrpb	62	70.946	Xenopus_tropicalis
FBgn0262601	SmB	74	65.563	ENSXMAG00000028767	snrpb	57	70.149	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	18981222.	IC	Process
GO:0003723	RNA binding	-	ISS	Function
GO:0005634	nucleus	17164419.20659974.	IDA	Component
GO:0005681	spliceosomal complex	10908584.	ISS	Component
GO:0005682	U5 snRNP	21873635.	IBA	Component
GO:0005685	U1 snRNP	21873635.	IBA	Component
GO:0005686	U2 snRNP	21873635.	IBA	Component
GO:0005687	U4 snRNP	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0007281	germ cell development	20659974.	IMP	Process
GO:0007283	spermatogenesis	27035939.	IMP	Process
GO:0008406	gonad development	20659974.	IMP	Process
GO:0015030	Cajal body	20659974.	IDA	Component
GO:0030532	small nuclear ribonucleoprotein complex	10908584.	ISS	Component
GO:0045495	pole plasm	20570937.20659974.	IDA	Component
GO:0046540	U4/U6 x U5 tri-snRNP complex	21873635.	IBA	Component
GO:0071004	U2-type prespliceosome	21873635.	IBA	Component
GO:0071011	precatalytic spliceosome	18981222.	HDA	Component
GO:0071013	catalytic step 2 spliceosome	18981222.	HDA	Component
GO:0071013	catalytic step 2 spliceosome	21873635.	IBA	Component