EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0262734 (Gene tree)
Gene ID: 49809
Gene Symbol: eIF4H1
Alias: -
Full Name: eukaryotic translation initiation factor 4H1
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Plus strand
Length: 6308 bases
Position: chrX:16448665-16454972
Accession: FBgn0262734
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0310226	RRM_1	PF00076.22	1.3e-12	1	1
FBpp0074056	RRM_1	PF00076.22	1.4e-12	1	1
FBpp0074055	RRM_1	PF00076.22	1.4e-12	1	1
FBpp0089381	RRM_1	PF00076.22	1.6e-12	1	1
FBpp0310225	RRM_1	PF00076.22	1.7e-12	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0343632	-	2730	-	FBpp0310225	388 (aa)	-	Q26272
FBtr0074281	-	2640	-	FBpp0089381	358 (aa)	-	Q7KUX7
FBtr0343633	-	2816	-	FBpp0310226	317 (aa)	-	X2JE34
FBtr0074279	-	3898	-	FBpp0074055	325 (aa)	-	Q9VXF8
FBtr0074280	-	3895	-	FBpp0074056	324 (aa)	-	E8NH88

Gene Model

Click here to download FBgn0262734's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0262734's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0262734	eIF4H1	65	54.545	ENSAMEG00000015416	EIF4H	61	54.902	Ailuropoda_melanoleuca
FBgn0262734	eIF4H1	56	58.974	ENSAOCG00000003041	eif4h	64	56.098	Amphiprion_ocellaris
FBgn0262734	eIF4H1	56	58.974	ENSAPEG00000022702	eif4h	64	56.098	Amphiprion_percula
FBgn0262734	eIF4H1	52	63.415	ENSAPLG00000009166	EIF4H	57	63.415	Anas_platyrhynchos
FBgn0262734	eIF4H1	65	54.545	ENSANAG00000029696	EIF4H	68	54.545	Aotus_nancymaae
FBgn0262734	eIF4H1	65	54.545	ENSCJAG00000019820	EIF4H	69	54.545	Callithrix_jacchus
FBgn0262734	eIF4H1	65	54.545	ENSCAFG00000012019	EIF4H	61	54.545	Canis_familiaris
FBgn0262734	eIF4H1	65	54.545	ENSCPOG00000019301	EIF4H	65	54.545	Cavia_porcellus
FBgn0262734	eIF4H1	65	54.545	ENSCHOG00000002525	EIF4H	62	54.902	Choloepus_hoffmanni
FBgn0262734	eIF4H1	94	39.935	ENSCPBG00000027695	EIF4H	57	63.415	Chrysemys_picta_bellii
FBgn0262734	eIF4H1	65	54.545	ENSCGRG00001000916	Eif4h	65	54.545	Cricetulus_griseus_chok1gshd
FBgn0262734	eIF4H1	51	62.162	ENSCVAG00000021728	eif4h	61	62.162	Cyprinodon_variegatus
FBgn0262734	eIF4H1	65	54.545	ENSDNOG00000049674	EIF4H	60	54.545	Dasypus_novemcinctus
FBgn0262734	eIF4H1	65	54.545	ENSFCAG00000029386	EIF4H	65	54.545	Felis_catus
FBgn0262734	eIF4H1	50	58.696	ENSFALG00000007155	EIF4H	57	60.976	Ficedula_albicollis
FBgn0262734	eIF4H1	50	59.783	ENSGALG00000001313	EIF4H	63	60.976	Gallus_gallus
FBgn0262734	eIF4H1	58	37.158	ENSHGLG00000006693	-	63	43.307	Heterocephalus_glaber_female
FBgn0262734	eIF4H1	58	37.158	ENSHGLG00100013834	-	63	43.307	Heterocephalus_glaber_male
FBgn0262734	eIF4H1	63	54.545	ENSSTOG00000020777	EIF4H	68	55.882	Ictidomys_tridecemlineatus
FBgn0262734	eIF4H1	58	61.538	ENSLOCG00000000875	eif4h	56	61.538	Lepisosteus_oculatus
FBgn0262734	eIF4H1	61	56.818	ENSMLEG00000021068	-	67	56.818	Mandrillus_leucophaeus
FBgn0262734	eIF4H1	50	62.162	ENSMZEG00005022684	eif4h	65	62.162	Maylandia_zebra
FBgn0262734	eIF4H1	65	54.545	ENSMICG00000010204	EIF4H	65	54.545	Microcebus_murinus
FBgn0262734	eIF4H1	65	54.545	ENSMOCG00000003802	Eif4h	65	54.545	Microtus_ochrogaster
FBgn0262734	eIF4H1	65	54.545	MGP_CAROLIEiJ_G0027816	Eif4h	65	54.545	Mus_caroli
FBgn0262734	eIF4H1	65	54.545	ENSMUSG00000040731	Eif4h	65	54.545	Mus_musculus
FBgn0262734	eIF4H1	65	54.545	MGP_PahariEiJ_G0024368	Eif4h	65	54.545	Mus_pahari
FBgn0262734	eIF4H1	65	54.545	MGP_SPRETEiJ_G0028814	Eif4h	65	54.545	Mus_spretus
FBgn0262734	eIF4H1	65	54.545	ENSNGAG00000000522	Eif4h	65	54.545	Nannospalax_galili
FBgn0262734	eIF4H1	62	62.162	ENSODEG00000015854	-	64	62.162	Octodon_degus
FBgn0262734	eIF4H1	65	54.545	ENSOGAG00000028051	EIF4H	60	54.545	Otolemur_garnettii
FBgn0262734	eIF4H1	65	54.545	ENSPPRG00000010557	EIF4H	65	54.545	Panthera_pardus
FBgn0262734	eIF4H1	65	56.818	ENSPANG00000016112	-	64	56.818	Papio_anubis
FBgn0262734	eIF4H1	50	63.415	ENSPSIG00000014490	EIF4H	54	63.415	Pelodiscus_sinensis
FBgn0262734	eIF4H1	65	54.545	ENSPEMG00000018422	Eif4h	65	54.545	Peromyscus_maniculatus_bairdii
FBgn0262734	eIF4H1	53	54.545	ENSPCIG00000017251	EIF4H	67	56.863	Phascolarctos_cinereus
FBgn0262734	eIF4H1	65	54.545	ENSPCOG00000024907	EIF4H	65	54.545	Propithecus_coquereli
FBgn0262734	eIF4H1	65	54.545	ENSPVAG00000011008	EIF4H	60	54.545	Pteropus_vampyrus
FBgn0262734	eIF4H1	63	61.538	ENSSFOG00015008101	eif4h	61	61.538	Scleropages_formosus
FBgn0262734	eIF4H1	65	54.545	ENSSSCG00000025966	EIF4H	65	54.545	Sus_scrofa
FBgn0262734	eIF4H1	52	57.732	ENSTGUG00000003901	EIF4H	56	60.976	Taeniopygia_guttata
FBgn0262734	eIF4H1	68	60.976	ENSTRUG00000010290	eif4h	61	60.976	Takifugu_rubripes
FBgn0262734	eIF4H1	65	54.545	ENSVPAG00000006838	EIF4H	57	54.902	Vicugna_pacos

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001731	formation of translation preinitiation complex	21873635.	IBA	Process
GO:0002181	cytoplasmic translation	21873635.	IBA	Process
GO:0003729	mRNA binding	10908586.	ISS	Function
GO:0003743	translation initiation factor activity	21873635.	IBA	Function
GO:0003743	translation initiation factor activity	10908586.	ISS	Function
GO:0005829	cytosol	10908586.	ISS	Component
GO:0005844	polysome	21873635.	IBA	Component
GO:0006413	translational initiation	10908586.	ISS	Process
GO:0033592	RNA strand annealing activity	21873635.	IBA	Function
GO:0034057	RNA strand-exchange activity	21873635.	IBA	Function
GO:0043024	ribosomal small subunit binding	21873635.	IBA	Function
GO:0097010	eukaryotic translation initiation factor 4F complex assembly	21873635.	IBA	Process