EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Gene Ontology

Description

Ensembl ID: FBgn0263396 (Gene tree)
Gene ID: 41666
Gene Symbol: sqd
Alias: -
Full Name: squid
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 11443 bases
Position: chr3R:13634862-13646304
Accession: FBgn0263396
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0082321	RRM_1	PF00076.22	1.3e-35	1	2
FBpp0082321	RRM_1	PF00076.22	1.3e-35	2	2
FBpp0301102	RRM_1	PF00076.22	1.3e-35	1	2
FBpp0301102	RRM_1	PF00076.22	1.3e-35	2	2
FBpp0082319	RRM_1	PF00076.22	1.4e-35	1	2
FBpp0082319	RRM_1	PF00076.22	1.4e-35	2	2
FBpp0082320	RRM_1	PF00076.22	1.8e-35	1	2
FBpp0082320	RRM_1	PF00076.22	1.8e-35	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0309094	-	2844	-	FBpp0301102	308 (aa)	-	A0A0B4K6U6
FBtr0082854	-	5551	-	FBpp0082319	321 (aa)	-	A0A0B4K6U6
FBtr0082855	-	2115	-	FBpp0082320	344 (aa)	-	Q08473
FBtr0082856	-	2239	-	FBpp0082321	308 (aa)	-	Q08473
FBtr0082857	-	1983	-	FBpp0089309	178 (aa)	-	Q08473-4

Gene Model

Click here to download FBgn0263396's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0263396's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
FBgn0263396	sqd	50	33.333	FBgn0064117	SLIRP1	92	33.333
FBgn0263396	sqd	52	38.824	FBgn0004237	Hrb87F	59	35.683
FBgn0263396	sqd	85	35.915	FBgn0260943	Rbp6	50	44.444
FBgn0263396	sqd	54	34.524	FBgn0037602	SLIRP2	99	34.524
FBgn0263396	sqd	60	35.533	FBgn0001215	Hrb98DE	79	32.404

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	12441250.	TAS	Process
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	15492211.	HMP	Process
GO:0000398	mRNA splicing, via spliceosome	18981222.	IC	Process
GO:0000785	chromatin	10984439.	IDA	Component
GO:0003680	AT DNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0003729	mRNA binding	10908586.	ISS	Function
GO:0003730	mRNA 3'-UTR binding	9642168.11700288.	TAS	Function
GO:0005634	nucleus	25294944.	HDA	Component
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	15492211.	IC	Component
GO:0005634	nucleus	1730753.10984439.	IDA	Component
GO:0005634	nucleus	9642168.11700288.	TAS	Component
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0005703	polytene chromosome puff	1730753.19346337.	IDA	Component
GO:0005730	nucleolus	1730753.	IDA	Component
GO:0005737	cytoplasm	11700288.	TAS	Component
GO:0006405	RNA export from nucleus	9642168.	TAS	Process
GO:0006406	mRNA export from nucleus	12446149.	NAS	Process
GO:0007293	germarium-derived egg chamber formation	16291786.	IMP	Process
GO:0007297	ovarian follicle cell migration	7684991.	IMP	Process
GO:0007314	oocyte anterior/posterior axis specification	16291786.	IMP	Process
GO:0008069	dorsal/ventral axis specification, ovarian follicular epithelium	7684991.	IMP	Process
GO:0008298	intracellular mRNA localization	12446149.	NAS	Process
GO:0008298	intracellular mRNA localization	9642168.11700288.12441250.	TAS	Process
GO:0009953	dorsal/ventral pattern formation	18082158.	IMP	Process
GO:0009953	dorsal/ventral pattern formation	9642168.12441250.	TAS	Process
GO:0016325	oocyte microtubule cytoskeleton organization	16291786.	IMP	Process
GO:0017148	negative regulation of translation	9642168.	TAS	Process
GO:0019094	pole plasm mRNA localization	15385627.	IMP	Process
GO:0030720	oocyte localization involved in germarium-derived egg chamber formation	16291786.	IMP	Process
GO:0033119	negative regulation of RNA splicing	19346337.	IMP	Process
GO:0035062	omega speckle	10984439.	IDA	Component
GO:0035925	mRNA 3'-UTR AU-rich region binding	21873635.	IBA	Function
GO:0043565	sequence-specific DNA binding	21873635.	IBA	Function
GO:0045451	pole plasm oskar mRNA localization	15791421.	IEP	Process
GO:0048477	oogenesis	16291786.	IMP	Process
GO:0048477	oogenesis	12441250.	TAS	Process
GO:0071011	precatalytic spliceosome	18981222.	HDA	Component
GO:0071013	catalytic step 2 spliceosome	18981222.	HDA	Component
GO:1990837	sequence-specific double-stranded DNA binding	21873635.	IBA	Function
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component