EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0263599 (Gene tree)
Gene ID: 39737
Gene Symbol: l(3)72Ab
Alias: -
Full Name: lethal (3) 72Ab
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 7037 bases
Position: chr3L:15960836-15967872
Accession: FBgn0263599
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0075282	ResIII	PF04851.15	2.6e-22	1	2
FBpp0075282	ResIII	PF04851.15	2.6e-22	2	2
FBpp0075282	DEAD	PF00270.29	1.3e-44	1	2
FBpp0075282	DEAD	PF00270.29	1.3e-44	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0075527	-	6707	-	FBpp0075282	2142 (aa)	-	Q9VUV9

Gene Model

Click here to download FBgn0263599's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0263599's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
FBgn0263599	l(3)72Ab	85	39.155	FBgn0038344	obe	80	40.991

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0263599	l(3)72Ab	99	74.209	ENSG00000144028	SNRNP200	99	75.507	Homo_sapiens
FBgn0263599	l(3)72Ab	99	74.298	ENSAPOG00000010223	snrnp200	100	73.976	Acanthochromis_polyacanthus
FBgn0263599	l(3)72Ab	99	74.302	ENSAMEG00000008996	SNRNP200	100	74.395	Ailuropoda_melanoleuca
FBgn0263599	l(3)72Ab	97	73.110	ENSACIG00000001764	snrnp200	98	73.003	Amphilophus_citrinellus
FBgn0263599	l(3)72Ab	99	74.251	ENSAOCG00000024593	snrnp200	100	73.929	Amphiprion_ocellaris
FBgn0263599	l(3)72Ab	97	72.843	ENSAPEG00000012554	snrnp200	100	72.737	Amphiprion_percula
FBgn0263599	l(3)72Ab	99	74.204	ENSATEG00000022522	snrnp200	100	73.883	Anabas_testudineus
FBgn0263599	l(3)72Ab	99	74.590	ENSAPLG00000004313	SNRNP200	100	74.684	Anas_platyrhynchos
FBgn0263599	l(3)72Ab	99	72.928	ENSACAG00000000434	SNRNP200	100	73.043	Anolis_carolinensis
FBgn0263599	l(3)72Ab	99	71.110	ENSANAG00000036625	SNRNP200	100	71.203	Aotus_nancymaae
FBgn0263599	l(3)72Ab	99	74.204	ENSACLG00000011188	snrnp200	100	73.883	Astatotilapia_calliptera
FBgn0263599	l(3)72Ab	99	73.970	ENSAMXG00000005684	snrnp200	100	73.591	Astyanax_mexicanus
FBgn0263599	l(3)72Ab	99	74.162	ENSBTAG00000000848	SNRNP200	100	74.255	Bos_taurus
FBgn0263599	l(3)72Ab	99	74.209	ENSCJAG00000007514	SNRNP200	100	74.302	Callithrix_jacchus
FBgn0263599	l(3)72Ab	99	73.596	ENSCAFG00020019979	SNRNP200	100	77.778	Canis_lupus_dingo
FBgn0263599	l(3)72Ab	99	74.162	ENSCHIG00000020611	SNRNP200	100	74.255	Capra_hircus
FBgn0263599	l(3)72Ab	99	74.209	ENSTSYG00000010467	SNRNP200	100	74.302	Carlito_syrichta
FBgn0263599	l(3)72Ab	99	73.913	ENSCAPG00000017234	SNRNP200	99	74.007	Cavia_aperea
FBgn0263599	l(3)72Ab	99	74.162	ENSCPOG00000006776	SNRNP200	100	74.255	Cavia_porcellus
FBgn0263599	l(3)72Ab	99	74.209	ENSCCAG00000033962	SNRNP200	100	74.302	Cebus_capucinus
FBgn0263599	l(3)72Ab	99	74.209	ENSCATG00000015790	SNRNP200	100	74.302	Cercocebus_atys
FBgn0263599	l(3)72Ab	99	74.069	ENSCLAG00000004116	SNRNP200	100	74.162	Chinchilla_lanigera
FBgn0263599	l(3)72Ab	99	74.209	ENSCSAG00000017369	SNRNP200	100	74.302	Chlorocebus_sabaeus
FBgn0263599	l(3)72Ab	73	83.034	ENSCHOG00000012981	-	56	83.034	Choloepus_hoffmanni
FBgn0263599	l(3)72Ab	99	74.245	ENSCPBG00000022571	SNRNP200	100	74.338	Chrysemys_picta_bellii
FBgn0263599	l(3)72Ab	99	70.088	ENSCING00000005082	-	99	70.121	Ciona_intestinalis
FBgn0263599	l(3)72Ab	99	69.717	ENSCANG00000033932	SNRNP200	100	74.122	Colobus_angolensis_palliatus
FBgn0263599	l(3)72Ab	99	74.162	ENSCGRG00001022610	Snrnp200	100	74.255	Cricetulus_griseus_chok1gshd
FBgn0263599	l(3)72Ab	99	73.733	ENSCGRG00000016472	Snrnp200	100	73.826	Cricetulus_griseus_crigri
FBgn0263599	l(3)72Ab	100	73.510	ENSCSEG00000016399	snrnp200	100	73.510	Cynoglossus_semilaevis
FBgn0263599	l(3)72Ab	100	69.893	ENSCVAG00000017631	snrnp200	100	69.800	Cyprinodon_variegatus
FBgn0263599	l(3)72Ab	100	73.777	ENSDARG00000077536	snrnp200	100	73.777	Danio_rerio
FBgn0263599	l(3)72Ab	99	73.464	ENSDNOG00000011227	SNRNP200	100	73.557	Dasypus_novemcinctus
FBgn0263599	l(3)72Ab	99	72.617	ENSDORG00000005861	Snrnp200	100	72.710	Dipodomys_ordii
FBgn0263599	l(3)72Ab	95	75.814	ENSETEG00000000162	SNRNP200	74	75.814	Echinops_telfairi
FBgn0263599	l(3)72Ab	83	75.157	ENSEBUG00000016524	snrnp200	95	75.426	Eptatretus_burgeri
FBgn0263599	l(3)72Ab	99	73.389	ENSEASG00005001884	SNRNP200	100	73.482	Equus_asinus_asinus
FBgn0263599	l(3)72Ab	99	74.255	ENSECAG00000019675	SNRNP200	100	74.348	Equus_caballus
FBgn0263599	l(3)72Ab	88	78.788	ENSEEUG00000012178	SNRNP200	93	78.788	Erinaceus_europaeus
FBgn0263599	l(3)72Ab	99	73.935	ENSELUG00000018948	snrnp200	100	73.755	Esox_lucius
FBgn0263599	l(3)72Ab	99	74.255	ENSFCAG00000010699	SNRNP200	100	74.348	Felis_catus
FBgn0263599	l(3)72Ab	92	72.072	ENSFALG00000001368	-	94	72.072	Ficedula_albicollis
FBgn0263599	l(3)72Ab	99	74.115	ENSFDAG00000004683	SNRNP200	100	74.209	Fukomys_damarensis
FBgn0263599	l(3)72Ab	100	71.661	ENSFHEG00000003786	snrnp200	100	71.661	Fundulus_heteroclitus
FBgn0263599	l(3)72Ab	100	72.305	ENSGMOG00000004881	snrnp200	99	72.398	Gadus_morhua
FBgn0263599	l(3)72Ab	100	71.801	ENSGAFG00000010807	snrnp200	100	71.801	Gambusia_affinis
FBgn0263599	l(3)72Ab	100	73.525	ENSGACG00000011474	snrnp200	99	73.572	Gasterosteus_aculeatus
FBgn0263599	l(3)72Ab	95	78.728	ENSGAGG00000016069	SNRNP200	99	74.341	Gopherus_agassizii
FBgn0263599	l(3)72Ab	99	74.209	ENSGGOG00000005174	SNRNP200	100	74.302	Gorilla_gorilla
FBgn0263599	l(3)72Ab	97	70.913	ENSHBUG00000011322	snrnp200	99	70.807	Haplochromis_burtoni
FBgn0263599	l(3)72Ab	99	74.162	ENSHGLG00000006654	SNRNP200	100	74.255	Heterocephalus_glaber_female
FBgn0263599	l(3)72Ab	99	74.162	ENSHGLG00100018594	SNRNP200	100	74.255	Heterocephalus_glaber_male
FBgn0263599	l(3)72Ab	99	74.162	ENSSTOG00000016351	SNRNP200	100	74.255	Ictidomys_tridecemlineatus
FBgn0263599	l(3)72Ab	99	74.115	ENSJJAG00000023659	Snrnp200	100	74.209	Jaculus_jaculus
FBgn0263599	l(3)72Ab	100	71.601	ENSKMAG00000003665	snrnp200	100	71.601	Kryptolebias_marmoratus
FBgn0263599	l(3)72Ab	100	73.650	ENSLBEG00000021585	snrnp200	100	73.650	Labrus_bergylta
FBgn0263599	l(3)72Ab	81	77.466	ENSLACG00000000226	SNRNP200	99	77.675	Latimeria_chalumnae
FBgn0263599	l(3)72Ab	100	74.140	ENSLOCG00000015198	snrnp200	100	74.233	Lepisosteus_oculatus
FBgn0263599	l(3)72Ab	99	74.302	ENSLAFG00000015626	SNRNP200	100	74.395	Loxodonta_africana
FBgn0263599	l(3)72Ab	99	74.162	ENSMFAG00000040174	SNRNP200	100	74.255	Macaca_fascicularis
FBgn0263599	l(3)72Ab	99	74.162	ENSMMUG00000023261	SNRNP200	100	74.255	Macaca_mulatta
FBgn0263599	l(3)72Ab	99	74.115	ENSMNEG00000032398	SNRNP200	100	74.209	Macaca_nemestrina
FBgn0263599	l(3)72Ab	99	74.209	ENSMLEG00000019083	SNRNP200	100	74.302	Mandrillus_leucophaeus
FBgn0263599	l(3)72Ab	100	73.709	ENSMAMG00000007851	snrnp200	100	73.709	Mastacembelus_armatus
FBgn0263599	l(3)72Ab	97	70.913	ENSMZEG00005010787	snrnp200	99	70.807	Maylandia_zebra
FBgn0263599	l(3)72Ab	97	74.459	ENSMGAG00000001831	SNRNP200	100	74.555	Meleagris_gallopavo
FBgn0263599	l(3)72Ab	99	74.115	ENSMAUG00000011825	Snrnp200	100	74.209	Mesocricetus_auratus
FBgn0263599	l(3)72Ab	99	74.209	ENSMICG00000004710	SNRNP200	100	74.302	Microcebus_murinus
FBgn0263599	l(3)72Ab	99	72.926	ENSMOCG00000011814	Snrnp200	100	72.926	Microtus_ochrogaster
FBgn0263599	l(3)72Ab	99	72.578	ENSMMOG00000014167	snrnp200	100	72.266	Mola_mola
FBgn0263599	l(3)72Ab	99	74.162	ENSMODG00000008475	SNRNP200	100	74.255	Monodelphis_domestica
FBgn0263599	l(3)72Ab	99	74.110	ENSMALG00000001973	snrnp200	100	73.883	Monopterus_albus
FBgn0263599	l(3)72Ab	99	74.162	MGP_CAROLIEiJ_G0024250	Snrnp200	100	74.255	Mus_caroli
FBgn0263599	l(3)72Ab	99	74.115	ENSMUSG00000003660	Snrnp200	100	74.209	Mus_musculus
FBgn0263599	l(3)72Ab	99	74.115	MGP_PahariEiJ_G0025695	Snrnp200	100	74.209	Mus_pahari
FBgn0263599	l(3)72Ab	99	74.115	MGP_SPRETEiJ_G0025170	Snrnp200	100	77.929	Mus_spretus
FBgn0263599	l(3)72Ab	99	74.162	ENSMPUG00000008949	SNRNP200	100	74.255	Mustela_putorius_furo
FBgn0263599	l(3)72Ab	99	72.207	ENSMLUG00000027511	-	100	72.253	Myotis_lucifugus
FBgn0263599	l(3)72Ab	99	74.105	ENSMLUG00000010493	SNRNP200	100	74.198	Myotis_lucifugus
FBgn0263599	l(3)72Ab	99	74.162	ENSNGAG00000021993	Snrnp200	100	74.255	Nannospalax_galili
FBgn0263599	l(3)72Ab	90	73.815	ENSNBRG00000017960	snrnp200	98	73.699	Neolamprologus_brichardi
FBgn0263599	l(3)72Ab	99	70.880	ENSNLEG00000000025	SNRNP200	100	70.972	Nomascus_leucogenys
FBgn0263599	l(3)72Ab	99	78.351	ENSMEUG00000010532	SNRNP200	79	76.190	Notamacropus_eugenii
FBgn0263599	l(3)72Ab	96	73.379	ENSOPRG00000015464	SNRNP200	100	71.508	Ochotona_princeps
FBgn0263599	l(3)72Ab	99	74.115	ENSODEG00000008366	SNRNP200	100	74.209	Octodon_degus
FBgn0263599	l(3)72Ab	99	74.298	ENSONIG00000010714	snrnp200	100	73.976	Oreochromis_niloticus
FBgn0263599	l(3)72Ab	99	74.209	ENSOCUG00000009864	SNRNP200	100	74.302	Oryctolagus_cuniculus
FBgn0263599	l(3)72Ab	99	73.346	ENSORLG00000012286	snrnp200	100	73.582	Oryzias_latipes
FBgn0263599	l(3)72Ab	99	73.253	ENSORLG00020004648	snrnp200	100	73.253	Oryzias_latipes_hni
FBgn0263599	l(3)72Ab	99	73.253	ENSORLG00015019114	snrnp200	100	73.253	Oryzias_latipes_hsok
FBgn0263599	l(3)72Ab	99	73.689	ENSOMEG00000011834	snrnp200	100	73.464	Oryzias_melastigma
FBgn0263599	l(3)72Ab	99	74.209	ENSOGAG00000006879	SNRNP200	100	74.302	Otolemur_garnettii
FBgn0263599	l(3)72Ab	99	73.383	ENSOARG00000013949	SNRNP200	100	73.476	Ovis_aries
FBgn0263599	l(3)72Ab	99	74.209	ENSPPAG00000041559	SNRNP200	100	74.302	Pan_paniscus
FBgn0263599	l(3)72Ab	99	74.255	ENSPPRG00000004435	SNRNP200	100	74.348	Panthera_pardus
FBgn0263599	l(3)72Ab	99	73.976	ENSPTIG00000006380	SNRNP200	100	74.069	Panthera_tigris_altaica
FBgn0263599	l(3)72Ab	99	74.209	ENSPTRG00000012230	SNRNP200	100	74.302	Pan_troglodytes
FBgn0263599	l(3)72Ab	99	74.209	ENSPANG00000006017	SNRNP200	100	74.302	Papio_anubis
FBgn0263599	l(3)72Ab	100	73.826	ENSPKIG00000014762	snrnp200	100	74.081	Paramormyrops_kingsleyae
FBgn0263599	l(3)72Ab	99	73.709	ENSPSIG00000008580	SNRNP200	100	73.802	Pelodiscus_sinensis
FBgn0263599	l(3)72Ab	99	74.115	ENSPCIG00000023050	SNRNP200	100	74.209	Phascolarctos_cinereus
FBgn0263599	l(3)72Ab	100	73.767	ENSPFOG00000015110	snrnp200	100	73.767	Poecilia_formosa
FBgn0263599	l(3)72Ab	97	73.016	ENSPLAG00000006711	snrnp200	99	73.016	Poecilia_latipinna
FBgn0263599	l(3)72Ab	97	73.016	ENSPMEG00000021166	snrnp200	99	73.016	Poecilia_mexicana
FBgn0263599	l(3)72Ab	100	73.802	ENSPREG00000008875	snrnp200	100	73.802	Poecilia_reticulata
FBgn0263599	l(3)72Ab	99	74.209	ENSPPYG00000012068	SNRNP200	100	74.302	Pongo_abelii
FBgn0263599	l(3)72Ab	97	83.974	ENSPCAG00000008536	SNRNP200	89	83.974	Procavia_capensis
FBgn0263599	l(3)72Ab	99	74.209	ENSPCOG00000024608	SNRNP200	100	74.302	Propithecus_coquereli
FBgn0263599	l(3)72Ab	96	74.745	ENSPVAG00000005860	SNRNP200	91	74.745	Pteropus_vampyrus
FBgn0263599	l(3)72Ab	99	70.355	ENSPNYG00000017476	snrnp200	100	70.056	Pundamilia_nyererei
FBgn0263599	l(3)72Ab	100	69.893	ENSPNAG00000010998	snrnp200	100	69.879	Pygocentrus_nattereri
FBgn0263599	l(3)72Ab	99	74.115	ENSRNOG00000012157	Snrnp200	100	74.209	Rattus_norvegicus
FBgn0263599	l(3)72Ab	99	74.209	ENSRBIG00000044690	-	100	74.302	Rhinopithecus_bieti
FBgn0263599	l(3)72Ab	99	74.209	ENSRROG00000037952	-	100	74.302	Rhinopithecus_roxellana
FBgn0263599	l(3)72Ab	99	74.209	ENSSBOG00000035471	SNRNP200	100	74.302	Saimiri_boliviensis_boliviensis
FBgn0263599	l(3)72Ab	97	74.026	ENSSHAG00000000758	SNRNP200	100	74.122	Sarcophilus_harrisii
FBgn0263599	l(3)72Ab	99	73.889	ENSSFOG00015018826	snrnp200	100	73.709	Scleropages_formosus
FBgn0263599	l(3)72Ab	99	73.876	ENSSMAG00000005463	snrnp200	100	73.650	Scophthalmus_maximus
FBgn0263599	l(3)72Ab	99	74.251	ENSSDUG00000021410	snrnp200	100	73.929	Seriola_dumerili
FBgn0263599	l(3)72Ab	99	74.110	ENSSLDG00000010884	snrnp200	100	73.790	Seriola_lalandi_dorsalis
FBgn0263599	l(3)72Ab	95	74.314	ENSSARG00000010728	SNRNP200	96	74.314	Sorex_araneus
FBgn0263599	l(3)72Ab	99	74.488	ENSSPUG00000003726	-	100	74.581	Sphenodon_punctatus
FBgn0263599	l(3)72Ab	99	74.298	ENSSPAG00000001842	snrnp200	100	73.976	Stegastes_partitus
FBgn0263599	l(3)72Ab	99	74.255	ENSSSCG00000008127	SNRNP200	100	74.348	Sus_scrofa
FBgn0263599	l(3)72Ab	99	65.697	ENSTGUG00000014475	-	100	65.697	Taeniopygia_guttata
FBgn0263599	l(3)72Ab	99	73.783	ENSTRUG00000001307	snrnp200	100	73.557	Takifugu_rubripes
FBgn0263599	l(3)72Ab	99	70.694	ENSTNIG00000004320	snrnp200	100	65.225	Tetraodon_nigroviridis
FBgn0263599	l(3)72Ab	82	80.749	ENSTBEG00000003329	-	64	80.749	Tupaia_belangeri
FBgn0263599	l(3)72Ab	99	74.022	ENSTTRG00000004983	SNRNP200	100	74.115	Tursiops_truncatus
FBgn0263599	l(3)72Ab	74	68.497	ENSUAMG00000008395	-	95	68.690	Ursus_americanus
FBgn0263599	l(3)72Ab	99	74.255	ENSUMAG00000012385	SNRNP200	100	74.348	Ursus_maritimus
FBgn0263599	l(3)72Ab	87	83.750	ENSVPAG00000006434	SNRNP200	66	83.750	Vicugna_pacos
FBgn0263599	l(3)72Ab	99	74.083	ENSVVUG00000026247	SNRNP200	100	74.176	Vulpes_vulpes
FBgn0263599	l(3)72Ab	99	73.281	ENSXETG00000001243	snrnp200	100	73.222	Xenopus_tropicalis
FBgn0263599	l(3)72Ab	97	72.964	ENSXMAG00000002058	snrnp200	98	72.964	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000278	mitotic cell cycle	18463163.	HMP	Process
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	15492211.	HMP	Process
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	19218244.	IMP	Process
GO:0000388	spliceosome conformational change to release U4 (or U4atac) and U1 (or U11)	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	18981222.	IC	Process
GO:0000398	mRNA splicing, via spliceosome	-	ISS	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003724	RNA helicase activity	9778506.	ISS	Function
GO:0004004	ATP-dependent RNA helicase activity	21873635.	IBA	Function
GO:0004004	ATP-dependent RNA helicase activity	10908586.	ISS	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	15492211.	IC	Component
GO:0005634	nucleus	24722212.	IDA	Component
GO:0005681	spliceosomal complex	21873635.	IBA	Component
GO:0005681	spliceosomal complex	-	ISS	Component
GO:0005682	U5 snRNP	21873635.	IBA	Component
GO:0007283	spermatogenesis	27035939.	IMP	Process
GO:0007419	ventral cord development	26092715.	HMP	Process
GO:0008026	ATP-dependent helicase activity	21873635.	IBA	Function
GO:0008380	RNA splicing	9778506.	ISS	Process
GO:0030532	small nuclear ribonucleoprotein complex	24722212.	IPI	Component
GO:0046540	U4/U6 x U5 tri-snRNP complex	21873635.	IBA	Component
GO:0071011	precatalytic spliceosome	18981222.	HDA	Component
GO:0071013	catalytic step 2 spliceosome	18981222.	HDA	Component
GO:0071013	catalytic step 2 spliceosome	21873635.	IBA	Component
GO:0071014	post-mRNA release spliceosomal complex	21873635.	IBA	Component