EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0263757 (Gene tree)
Gene ID: 14462484
Gene Symbol: Rpb4
Alias: -
Full Name: RNA polymerase II subunit Rpb4
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Minus strand
Length: 2645 bases
Position: chr3R:18252843-18255487
Accession: FBgn0263757
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0302530	RNA_pol_Rpb4	PF03874.16	1e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0310379	-	722	-	FBpp0302530	139 (aa)	-	Q9VEA5

Gene Model

Click here to download FBgn0263757's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0263757's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0263757	Rpb4	94	77.692	ENSG00000144231	POLR2D	100	77.885	Homo_sapiens
FBgn0263757	Rpb4	96	78.195	ENSAPOG00000023553	polr2d	92	78.195	Acanthochromis_polyacanthus
FBgn0263757	Rpb4	94	76.515	ENSAMEG00000011746	POLR2D	92	76.515	Ailuropoda_melanoleuca
FBgn0263757	Rpb4	96	78.195	ENSAOCG00000007295	polr2d	92	78.195	Amphiprion_ocellaris
FBgn0263757	Rpb4	96	78.195	ENSAPEG00000018714	polr2d	92	78.195	Amphiprion_percula
FBgn0263757	Rpb4	96	78.195	ENSATEG00000020416	polr2d	92	78.195	Anabas_testudineus
FBgn0263757	Rpb4	94	78.462	ENSACAG00000005255	POLR2D	92	78.462	Anolis_carolinensis
FBgn0263757	Rpb4	94	77.692	ENSANAG00000019959	POLR2D	92	77.692	Aotus_nancymaae
FBgn0263757	Rpb4	96	77.444	ENSACLG00000009919	polr2d	90	56.391	Astatotilapia_calliptera
FBgn0263757	Rpb4	96	78.195	ENSAMXG00000008954	polr2d	93	78.195	Astyanax_mexicanus
FBgn0263757	Rpb4	94	77.692	ENSBTAG00000053244	POLR2D	92	77.692	Bos_taurus
FBgn0263757	Rpb4	93	51.908	WBGene00018391	rpb-4	91	51.908	Caenorhabditis_elegans
FBgn0263757	Rpb4	94	76.923	ENSCJAG00000021814	-	92	76.923	Callithrix_jacchus
FBgn0263757	Rpb4	94	77.692	ENSCJAG00000042216	-	92	77.692	Callithrix_jacchus
FBgn0263757	Rpb4	94	77.692	ENSCAFG00000004311	POLR2D	92	77.692	Canis_familiaris
FBgn0263757	Rpb4	94	77.692	ENSCAFG00020003617	POLR2D	92	77.692	Canis_lupus_dingo
FBgn0263757	Rpb4	94	77.692	ENSCHIG00000025995	POLR2D	92	77.692	Capra_hircus
FBgn0263757	Rpb4	84	78.632	ENSTSYG00000036021	POLR2D	100	78.632	Carlito_syrichta
FBgn0263757	Rpb4	94	76.923	ENSCPOG00000002571	POLR2D	92	76.923	Cavia_porcellus
FBgn0263757	Rpb4	94	77.692	ENSCCAG00000037709	POLR2D	92	77.692	Cebus_capucinus
FBgn0263757	Rpb4	94	77.692	ENSCATG00000036749	POLR2D	92	77.692	Cercocebus_atys
FBgn0263757	Rpb4	94	76.923	ENSCLAG00000004449	POLR2D	92	76.923	Chinchilla_lanigera
FBgn0263757	Rpb4	94	77.692	ENSCSAG00000016861	POLR2D	92	77.692	Chlorocebus_sabaeus
FBgn0263757	Rpb4	84	78.632	ENSCHOG00000013850	POLR2D	100	78.632	Choloepus_hoffmanni
FBgn0263757	Rpb4	92	72.656	ENSCING00000011474	-	96	72.656	Ciona_intestinalis
FBgn0263757	Rpb4	92	74.219	ENSCSAVG00000008353	-	88	74.219	Ciona_savignyi
FBgn0263757	Rpb4	94	77.692	ENSCANG00000043665	POLR2D	92	77.692	Colobus_angolensis_palliatus
FBgn0263757	Rpb4	94	77.692	ENSCGRG00001013608	Polr2d	92	77.692	Cricetulus_griseus_chok1gshd
FBgn0263757	Rpb4	84	78.632	ENSCGRG00000012624	Polr2d	100	78.632	Cricetulus_griseus_crigri
FBgn0263757	Rpb4	96	77.444	ENSCSEG00000006147	polr2d	92	77.444	Cynoglossus_semilaevis
FBgn0263757	Rpb4	94	78.462	ENSCVAG00000000779	polr2d	90	78.462	Cyprinodon_variegatus
FBgn0263757	Rpb4	96	78.947	ENSDARG00000076509	polr2d	94	78.947	Danio_rerio
FBgn0263757	Rpb4	94	77.692	ENSDNOG00000008527	POLR2D	92	77.692	Dasypus_novemcinctus
FBgn0263757	Rpb4	94	77.692	ENSDORG00000026897	Polr2d	92	77.692	Dipodomys_ordii
FBgn0263757	Rpb4	94	80.000	ENSEBUG00000007675	polr2d	92	80.000	Eptatretus_burgeri
FBgn0263757	Rpb4	94	77.692	ENSEASG00005007103	POLR2D	92	77.692	Equus_asinus_asinus
FBgn0263757	Rpb4	94	77.692	ENSECAG00000000556	POLR2D	92	77.692	Equus_caballus
FBgn0263757	Rpb4	96	78.947	ENSELUG00000005928	polr2d	93	78.947	Esox_lucius
FBgn0263757	Rpb4	94	77.692	ENSFCAG00000027816	POLR2D	92	77.692	Felis_catus
FBgn0263757	Rpb4	94	78.462	ENSFALG00000003528	POLR2D	92	78.462	Ficedula_albicollis
FBgn0263757	Rpb4	94	76.923	ENSFDAG00000007217	POLR2D	92	76.923	Fukomys_damarensis
FBgn0263757	Rpb4	96	78.195	ENSGMOG00000001823	polr2d	92	78.195	Gadus_morhua
FBgn0263757	Rpb4	94	78.462	ENSGALG00000002057	POLR2D	92	78.462	Gallus_gallus
FBgn0263757	Rpb4	94	79.231	ENSGAFG00000016932	polr2d	64	79.231	Gambusia_affinis
FBgn0263757	Rpb4	96	75.940	ENSGACG00000004639	polr2d	92	75.940	Gasterosteus_aculeatus
FBgn0263757	Rpb4	94	78.462	ENSGAGG00000021308	POLR2D	92	78.462	Gopherus_agassizii
FBgn0263757	Rpb4	94	77.692	ENSGGOG00000004723	POLR2D	92	77.692	Gorilla_gorilla
FBgn0263757	Rpb4	94	76.923	ENSHGLG00000016570	Polr2d	92	76.923	Heterocephalus_glaber_female
FBgn0263757	Rpb4	94	76.923	ENSHGLG00100013785	Polr2d	92	76.923	Heterocephalus_glaber_male
FBgn0263757	Rpb4	96	75.940	ENSHCOG00000006425	polr2d	94	75.940	Hippocampus_comes
FBgn0263757	Rpb4	96	78.195	ENSIPUG00000011192	polr2d	94	78.195	Ictalurus_punctatus
FBgn0263757	Rpb4	94	76.923	ENSSTOG00000023329	POLR2D	92	76.923	Ictidomys_tridecemlineatus
FBgn0263757	Rpb4	96	69.403	ENSJJAG00000000783	-	94	69.403	Jaculus_jaculus
FBgn0263757	Rpb4	84	74.359	ENSJJAG00000005723	-	94	74.359	Jaculus_jaculus
FBgn0263757	Rpb4	94	77.692	ENSJJAG00000015053	-	92	77.692	Jaculus_jaculus
FBgn0263757	Rpb4	84	78.632	ENSKMAG00000010677	polr2d	66	78.632	Kryptolebias_marmoratus
FBgn0263757	Rpb4	96	78.195	ENSLACG00000017253	POLR2D	94	78.195	Latimeria_chalumnae
FBgn0263757	Rpb4	96	78.195	ENSLOCG00000009106	polr2d	92	78.195	Lepisosteus_oculatus
FBgn0263757	Rpb4	94	77.692	ENSLAFG00000001848	POLR2D	92	77.692	Loxodonta_africana
FBgn0263757	Rpb4	94	77.692	ENSMFAG00000031937	POLR2D	92	77.692	Macaca_fascicularis
FBgn0263757	Rpb4	94	77.692	ENSMMUG00000001989	POLR2D	92	77.692	Macaca_mulatta
FBgn0263757	Rpb4	94	77.692	ENSMNEG00000035505	POLR2D	92	77.692	Macaca_nemestrina
FBgn0263757	Rpb4	94	77.692	ENSMLEG00000035827	POLR2D	92	77.692	Mandrillus_leucophaeus
FBgn0263757	Rpb4	94	78.462	ENSMGAG00000001248	POLR2D	92	78.462	Meleagris_gallopavo
FBgn0263757	Rpb4	94	77.692	ENSMAUG00000014518	Polr2d	92	77.692	Mesocricetus_auratus
FBgn0263757	Rpb4	94	77.692	ENSMICG00000009931	POLR2D	92	77.692	Microcebus_murinus
FBgn0263757	Rpb4	94	75.385	ENSMOCG00000019367	Polr2d	91	75.385	Microtus_ochrogaster
FBgn0263757	Rpb4	94	65.385	ENSMODG00000025026	-	92	65.385	Monodelphis_domestica
FBgn0263757	Rpb4	94	65.385	ENSMODG00000025027	-	92	65.385	Monodelphis_domestica
FBgn0263757	Rpb4	94	65.385	ENSMODG00000025028	-	92	65.385	Monodelphis_domestica
FBgn0263757	Rpb4	94	64.615	ENSMODG00000025029	-	92	64.615	Monodelphis_domestica
FBgn0263757	Rpb4	94	64.615	ENSMODG00000025032	-	92	64.615	Monodelphis_domestica
FBgn0263757	Rpb4	94	78.462	ENSMODG00000018653	-	92	78.462	Monodelphis_domestica
FBgn0263757	Rpb4	94	64.615	ENSMODG00000025033	-	92	64.615	Monodelphis_domestica
FBgn0263757	Rpb4	94	64.615	ENSMODG00000025031	-	92	64.615	Monodelphis_domestica
FBgn0263757	Rpb4	94	65.385	ENSMODG00000025030	-	92	65.385	Monodelphis_domestica
FBgn0263757	Rpb4	94	64.615	ENSMODG00000025036	-	92	64.615	Monodelphis_domestica
FBgn0263757	Rpb4	94	64.615	ENSMODG00000025035	-	92	64.615	Monodelphis_domestica
FBgn0263757	Rpb4	94	64.615	ENSMODG00000025034	-	92	64.615	Monodelphis_domestica
FBgn0263757	Rpb4	96	78.195	ENSMALG00000018266	polr2d	92	78.195	Monopterus_albus
FBgn0263757	Rpb4	94	77.692	MGP_CAROLIEiJ_G0022066	Polr2d	92	77.692	Mus_caroli
FBgn0263757	Rpb4	94	77.692	ENSMUSG00000024258	Polr2d	92	77.692	Mus_musculus
FBgn0263757	Rpb4	94	77.692	MGP_PahariEiJ_G0018800	Polr2d	92	77.692	Mus_pahari
FBgn0263757	Rpb4	94	77.692	MGP_SPRETEiJ_G0022977	Polr2d	92	77.692	Mus_spretus
FBgn0263757	Rpb4	94	77.692	ENSMPUG00000016685	POLR2D	92	77.692	Mustela_putorius_furo
FBgn0263757	Rpb4	85	78.814	ENSMLUG00000006862	POLR2D	100	78.814	Myotis_lucifugus
FBgn0263757	Rpb4	94	77.692	ENSNGAG00000014862	Polr2d	92	77.692	Nannospalax_galili
FBgn0263757	Rpb4	94	77.692	ENSNLEG00000027191	POLR2D	92	77.692	Nomascus_leucogenys
FBgn0263757	Rpb4	84	78.632	ENSOPRG00000005327	POLR2D	100	78.632	Ochotona_princeps
FBgn0263757	Rpb4	94	76.923	ENSODEG00000005262	POLR2D	92	76.923	Octodon_degus
FBgn0263757	Rpb4	96	78.195	ENSONIG00000017290	polr2d	92	78.195	Oreochromis_niloticus
FBgn0263757	Rpb4	85	79.661	ENSOANG00000013216	POLR2D	100	79.661	Ornithorhynchus_anatinus
FBgn0263757	Rpb4	94	77.692	ENSOCUG00000023403	-	92	77.692	Oryctolagus_cuniculus
FBgn0263757	Rpb4	94	72.519	ENSOCUG00000021449	-	92	72.519	Oryctolagus_cuniculus
FBgn0263757	Rpb4	99	74.638	ENSORLG00000005266	polr2d	96	74.638	Oryzias_latipes
FBgn0263757	Rpb4	99	74.638	ENSORLG00020006647	polr2d	96	74.638	Oryzias_latipes_hni
FBgn0263757	Rpb4	99	74.638	ENSORLG00015003222	polr2d	96	74.638	Oryzias_latipes_hsok
FBgn0263757	Rpb4	96	76.692	ENSOMEG00000018915	polr2d	92	76.692	Oryzias_melastigma
FBgn0263757	Rpb4	94	76.515	ENSOGAG00000017118	POLR2D	92	76.515	Otolemur_garnettii
FBgn0263757	Rpb4	94	77.692	ENSOARG00000015995	POLR2D	92	77.692	Ovis_aries
FBgn0263757	Rpb4	94	77.692	ENSPPRG00000020222	POLR2D	92	77.692	Panthera_pardus
FBgn0263757	Rpb4	94	77.692	ENSPTIG00000018618	POLR2D	92	77.692	Panthera_tigris_altaica
FBgn0263757	Rpb4	94	77.692	ENSPTRG00000012436	POLR2D	92	77.692	Pan_troglodytes
FBgn0263757	Rpb4	94	77.692	ENSPANG00000018602	POLR2D	92	77.692	Papio_anubis
FBgn0263757	Rpb4	94	80.000	ENSPKIG00000012166	polr2d	90	80.000	Paramormyrops_kingsleyae
FBgn0263757	Rpb4	85	79.661	ENSPSIG00000002873	POLR2D	100	79.661	Pelodiscus_sinensis
FBgn0263757	Rpb4	94	77.692	ENSPEMG00000018244	Polr2d	92	77.692	Peromyscus_maniculatus_bairdii
FBgn0263757	Rpb4	93	76.744	ENSPMAG00000005021	polr2d	90	76.744	Petromyzon_marinus
FBgn0263757	Rpb4	94	79.231	ENSPFOG00000008969	polr2d	90	79.231	Poecilia_formosa
FBgn0263757	Rpb4	94	79.231	ENSPLAG00000017210	polr2d	90	79.231	Poecilia_latipinna
FBgn0263757	Rpb4	94	79.231	ENSPMEG00000005160	polr2d	90	79.231	Poecilia_mexicana
FBgn0263757	Rpb4	75	78.846	ENSPREG00000021862	polr2d	100	78.846	Poecilia_reticulata
FBgn0263757	Rpb4	94	77.692	ENSPPYG00000012759	POLR2D	92	77.692	Pongo_abelii
FBgn0263757	Rpb4	94	77.692	ENSPCAG00000001396	POLR2D	92	77.692	Procavia_capensis
FBgn0263757	Rpb4	94	77.692	ENSPCOG00000022076	POLR2D	92	77.692	Propithecus_coquereli
FBgn0263757	Rpb4	94	77.692	ENSPVAG00000004002	POLR2D	92	77.692	Pteropus_vampyrus
FBgn0263757	Rpb4	96	78.947	ENSPNAG00000018246	polr2d	93	78.947	Pygocentrus_nattereri
FBgn0263757	Rpb4	94	77.692	ENSRNOG00000016231	Polr2d	92	77.692	Rattus_norvegicus
FBgn0263757	Rpb4	94	77.692	ENSRBIG00000039326	POLR2D	92	77.692	Rhinopithecus_bieti
FBgn0263757	Rpb4	94	77.692	ENSRROG00000023289	POLR2D	92	77.692	Rhinopithecus_roxellana
FBgn0263757	Rpb4	94	78.462	ENSSHAG00000014817	-	92	78.462	Sarcophilus_harrisii
FBgn0263757	Rpb4	94	80.000	ENSSFOG00015024204	polr2d	97	76.259	Scleropages_formosus
FBgn0263757	Rpb4	96	77.444	ENSSDUG00000006060	polr2d	92	77.444	Seriola_dumerili
FBgn0263757	Rpb4	96	77.444	ENSSLDG00000024485	polr2d	92	77.444	Seriola_lalandi_dorsalis
FBgn0263757	Rpb4	84	77.778	ENSSARG00000009037	POLR2D	100	77.778	Sorex_araneus
FBgn0263757	Rpb4	94	78.462	ENSSPUG00000014915	POLR2D	92	78.462	Sphenodon_punctatus
FBgn0263757	Rpb4	96	78.195	ENSSPAG00000013386	polr2d	92	78.195	Stegastes_partitus
FBgn0263757	Rpb4	94	77.692	ENSSSCG00000039230	POLR2D	92	77.692	Sus_scrofa
FBgn0263757	Rpb4	94	78.462	ENSTGUG00000005773	POLR2D	91	78.462	Taeniopygia_guttata
FBgn0263757	Rpb4	96	77.612	ENSTRUG00000004740	polr2d	94	77.612	Takifugu_rubripes
FBgn0263757	Rpb4	96	78.358	ENSTNIG00000011210	polr2d	94	78.358	Tetraodon_nigroviridis
FBgn0263757	Rpb4	84	78.632	ENSTBEG00000006081	POLR2D	100	78.632	Tupaia_belangeri
FBgn0263757	Rpb4	84	78.632	ENSTTRG00000010055	POLR2D	100	78.632	Tursiops_truncatus
FBgn0263757	Rpb4	94	76.923	ENSUAMG00000024374	POLR2D	98	76.923	Ursus_americanus
FBgn0263757	Rpb4	86	78.333	ENSUMAG00000008280	POLR2D	100	77.885	Ursus_maritimus
FBgn0263757	Rpb4	84	78.632	ENSVPAG00000007239	POLR2D	100	78.632	Vicugna_pacos
FBgn0263757	Rpb4	94	77.692	ENSVVUG00000008616	POLR2D	92	77.692	Vulpes_vulpes
FBgn0263757	Rpb4	93	76.744	ENSXETG00000002955	polr2d	91	76.744	Xenopus_tropicalis
FBgn0263757	Rpb4	75	78.846	ENSXCOG00000012668	polr2d	100	78.846	Xiphophorus_couchianus
FBgn0263757	Rpb4	75	78.846	ENSXMAG00000014031	polr2d	100	78.846	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000288	nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	21873635.	IBA	Process
GO:0000932	P-body	21873635.	IBA	Component
GO:0003697	single-stranded DNA binding	21873635.	IBA	Function
GO:0003727	single-stranded RNA binding	21873635.	IBA	Function
GO:0003899	DNA-directed 5'-3' RNA polymerase activity	21873635.	IBA	Function
GO:0003899	DNA-directed 5'-3' RNA polymerase activity	12482983.	IDA	Function
GO:0003899	DNA-directed 5'-3' RNA polymerase activity	10908585.	ISS	Function
GO:0005515	protein binding	12482983.	IPI	Function
GO:0005665	RNA polymerase II, core complex	21873635.	IBA	Component
GO:0005665	RNA polymerase II, core complex	12482983.	IDA	Component
GO:0005665	RNA polymerase II, core complex	10908585.	ISS	Component
GO:0005700	polytene chromosome	12482983.	IDA	Component
GO:0005701	polytene chromosome chromocenter	19921261.	IDA	Component
GO:0005703	polytene chromosome puff	19921261.	IDA	Component
GO:0005705	polytene chromosome interband	19921261.	IDA	Component
GO:0006366	transcription by RNA polymerase II	12482983.	IDA	Process
GO:0006366	transcription by RNA polymerase II	10908585.	ISS	Process
GO:0006367	transcription initiation from RNA polymerase II promoter	21873635.	IBA	Process
GO:0031369	translation initiation factor binding	21873635.	IBA	Function
GO:0031990	mRNA export from nucleus in response to heat stress	21873635.	IBA	Process
GO:0034402	recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex	21873635.	IBA	Process
GO:0035079	polytene chromosome puffing	19412618.	IMP	Process
GO:0045948	positive regulation of translational initiation	21873635.	IBA	Process