EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0263987 (Gene tree)
Gene ID: 31459
Gene Symbol: spoon
Alias: -
Full Name: spoonbill
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 8482 bases
Position: chrX:5412386-5420867
Accession: FBgn0263987
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0070760	KH_1	PF00013.29	8.5e-09	1	1
FBpp0300894	KH_1	PF00013.29	8.5e-09	1	1
FBpp0300895	KH_1	PF00013.29	8.5e-09	1	1
FBpp0070761	KH_1	PF00013.29	9.1e-09	1	1
FBpp0070760	TUDOR	PF00567.24	9.6e-24	1	1
FBpp0300894	TUDOR	PF00567.24	9.6e-24	1	1
FBpp0300895	TUDOR	PF00567.24	9.6e-24	1	1
FBpp0070761	TUDOR	PF00567.24	1e-23	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0070794	-	3341	-	FBpp0070760	585 (aa)	-	Q9W4C4
FBtr0308688	-	3668	-	FBpp0300894	585 (aa)	-	Q95RI6
FBtr0070795	-	4509	-	FBpp0070761	607 (aa)	-	Q7KVW1
FBtr0308689	-	3179	-	FBpp0300895	585 (aa)	-	Q9W4C4

Gene Model

Click here to download FBgn0263987's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0263987's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0263987	spoon	59	30.460	ENSG00000121057	AKAP1	93	35.329	Homo_sapiens
FBgn0263987	spoon	55	30.473	ENSELUG00000011820	-	72	30.473	Esox_lucius
FBgn0263987	spoon	57	30.060	ENSMMUG00000012644	AKAP1	93	35.329	Macaca_mulatta
FBgn0263987	spoon	54	32.099	ENSMODG00000028428	-	96	32.099	Monodelphis_domestica
FBgn0263987	spoon	50	32.107	ENSNGAG00000014799	-	50	32.203	Nannospalax_galili
FBgn0263987	spoon	50	33.667	ENSPKIG00000007175	-	56	32.822	Paramormyrops_kingsleyae
FBgn0263987	spoon	57	31.965	ENSTGUG00000008464	-	74	31.965	Taeniopygia_guttata

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0005739	mitochondrion	21983075.27053724.	IDA	Component
GO:0005741	mitochondrial outer membrane	27053724.	IDA	Component
GO:0005794	Golgi apparatus	21983075.	IDA	Component
GO:0007298	border follicle cell migration	17492752.	IMP	Process
GO:0007616	long-term memory	17690248.	IMP	Process
GO:0008069	dorsal/ventral axis specification, ovarian follicular epithelium	15188438.	IMP	Process
GO:0008070	maternal determination of dorsal/ventral axis, ovarian follicular epithelium, germ-line encoded	17492752.	IMP	Process
GO:0008298	intracellular mRNA localization	15188438.	IMP	Process
GO:0010738	regulation of protein kinase A signaling	-	IEA	Process
GO:0030837	negative regulation of actin filament polymerization	17492752.	IGI	Process
GO:0030837	negative regulation of actin filament polymerization	17492752.	IMP	Process
GO:0034237	protein kinase A regulatory subunit binding	-	IEA	Function
GO:0040040	thermosensory behavior	18594510.	IMP	Process
GO:0046843	dorsal appendage formation	15188438.17492752.	IMP	Process
GO:0051276	chromosome organization	15188438.	IMP	Process
GO:0060269	centripetally migrating follicle cell migration	17492752.	IMP	Process