EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0265297 (Gene tree)
Gene ID: 37070
Gene Symbol: pAbp
Alias: -
Full Name: poly(A) binding protein
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Plus strand
Length: 7114 bases
Position: chr2R:18140078-18147191
Accession: FBgn0265297
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0085915	PABP	PF00658.18	2.2e-28	1	1
FBpp0085917	PABP	PF00658.18	2.2e-28	1	1
FBpp0085919	PABP	PF00658.18	2.2e-28	1	1
FBpp0085915	RRM_5	PF13893.6	2e-09	1	1
FBpp0085917	RRM_5	PF13893.6	2e-09	1	1
FBpp0085919	RRM_5	PF13893.6	2e-09	1	1
FBpp0085915	RRM_1	PF00076.22	3.4e-83	1	4
FBpp0085915	RRM_1	PF00076.22	3.4e-83	2	4
FBpp0085915	RRM_1	PF00076.22	3.4e-83	3	4
FBpp0085915	RRM_1	PF00076.22	3.4e-83	4	4
FBpp0085917	RRM_1	PF00076.22	3.4e-83	1	4
FBpp0085917	RRM_1	PF00076.22	3.4e-83	2	4
FBpp0085917	RRM_1	PF00076.22	3.4e-83	3	4
FBpp0085917	RRM_1	PF00076.22	3.4e-83	4	4
FBpp0085919	RRM_1	PF00076.22	3.4e-83	1	4
FBpp0085919	RRM_1	PF00076.22	3.4e-83	2	4
FBpp0085919	RRM_1	PF00076.22	3.4e-83	3	4
FBpp0085919	RRM_1	PF00076.22	3.4e-83	4	4

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0086740	-	3870	-	FBpp0085919	634 (aa)	-	P21187
FBtr0086738	-	2433	-	FBpp0085917	634 (aa)	-	P21187
FBtr0086736	-	3127	-	FBpp0085915	634 (aa)	-	P21187

Gene Model

Click here to download FBgn0265297's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0265297's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
FBgn0265297	pAbp	61	60.309	FBgn0035016	CG4612	63	60.204
FBgn0265297	pAbp	58	34.615	FBgn0015818	Spx	57	37.195
FBgn0265297	pAbp	59	32.828	FBgn0264270	Sxl	85	30.128
FBgn0265297	pAbp	59	37.879	FBgn0010263	Rbp9	75	31.818
FBgn0265297	pAbp	57	30.769	FBgn0031607	CG15440	53	30.769

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0265297	pAbp	98	49.321	WBGene00003903	pab-2	97	49.664	Caenorhabditis_elegans
FBgn0265297	pAbp	62	69.960	ENSCING00000024279	-	96	69.960	Ciona_intestinalis
FBgn0265297	pAbp	61	54.663	YER165W	-	72	51.748	Saccharomyces_cerevisiae
FBgn0265297	pAbp	52	74.242	ENSSLDG00000002735	-	96	74.242	Seriola_lalandi_dorsalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	18981222.	IC	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003729	mRNA binding	10908586.	ISS	Function
GO:0003730	mRNA 3'-UTR binding	21873635.	IBA	Function
GO:0003730	mRNA 3'-UTR binding	17890223.21782810.	IDA	Function
GO:0005515	protein binding	14729960.19797087.	IPI	Function
GO:0005634	nucleus	24292889.	HDA	Component
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	10890448.21782810.	IDA	Component
GO:0005829	cytosol	25294944.	HDA	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0007112	male meiosis cytokinesis	20604743.	IMP	Process
GO:0007140	male meiotic nuclear division	19631203.	IMP	Process
GO:0007268	chemical synaptic transmission	12417665.	IMP	Process
GO:0007283	spermatogenesis	20604743.	IMP	Process
GO:0007289	spermatid nucleus differentiation	20604743.	IMP	Process
GO:0008143	poly(A) binding	21873635.	IBA	Function
GO:0008143	poly(A) binding	10908584.	ISS	Function
GO:0008143	poly(A) binding	11700288.	TAS	Function
GO:0008266	poly(U) RNA binding	21873635.	IBA	Function
GO:0009953	dorsal/ventral pattern formation	18082158.	IMP	Process
GO:0010494	cytoplasmic stress granule	21873635.	IBA	Component
GO:0045314	regulation of compound eye photoreceptor development	18271626.	IGI	Process
GO:0045727	positive regulation of translation	18082158.	IGI	Process
GO:0045727	positive regulation of translation	11700288.	TAS	Process
GO:0048477	oogenesis	18082158.	IMP	Process
GO:0048599	oocyte development	21782810.	IMP	Process
GO:0071011	precatalytic spliceosome	18981222.	HDA	Component
GO:0071013	catalytic step 2 spliceosome	18981222.	HDA	Component
GO:1901215	negative regulation of neuron death	18271626.	IGI	Process
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component
GO:1990904	ribonucleoprotein complex	17890223.	IDA	Component