EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0265298 (Gene tree)
Gene ID: 53444
Gene Symbol: SC35
Alias: -
Full Name: SR family splicing factor SC35
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 3591 bases
Position: chr2L:12431075-12434665
Accession: FBgn0265298
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0088838	RRM_1	PF00076.22	8.8e-22	1	1
FBpp0292041	RRM_1	PF00076.22	8.8e-22	1	1
FBpp0297362	RRM_1	PF00076.22	8.8e-22	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0089899	-	1077	-	FBpp0088838	195 (aa)	-	Q9V3T8
FBtr0089898	-	980	-	FBpp0088837	112 (aa)	-	Q7KTD2
FBtr0302910	-	1441	-	FBpp0292041	195 (aa)	-	Q9V3T8
FBtr0306252	-	1880	-	FBpp0297362	195 (aa)	-	C1C547

Gene Model

Click here to download FBgn0265298's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0265298's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0265298	SC35	54	60.377	WBGene00004701	rsp-4	70	62.500	Caenorhabditis_elegans
FBgn0265298	SC35	57	71.930	ENSDARG00000057484	srsf2a	75	82.022	Danio_rerio

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	15492211.	HMP	Process
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	25414008.	IMP	Process
GO:0000785	chromatin	10984439.	IDA	Component
GO:0001178	regulation of transcriptional start site selection at RNA polymerase II promoter	25414008.	IMP	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003729	mRNA binding	25414008.	IDA	Function
GO:0003729	mRNA binding	10908586.	ISS	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	15492211.	IC	Component
GO:0005634	nucleus	12134081.	IDA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0010468	regulation of gene expression	25414008.	IMP	Process
GO:0016607	nuclear speck	21873635.	IBA	Component
GO:0016607	nuclear speck	10984439.	IDA	Component
GO:0031440	regulation of mRNA 3'-end processing	25414008.	IMP	Process
GO:0035062	omega speckle	10984439.	IDA	Component
GO:0045292	mRNA cis splicing, via spliceosome	21873635.	IBA	Process