EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0266917 (Gene tree)
Gene ID: 42048
Gene Symbol: Sf3a1
Alias: -
Full Name: Splicing factor 3a subunit 1
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 2972 bases
Position: chr3R:16999384-17002355
Accession: FBgn0266917
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0082817	PRP21_like_P	PF12230.8	1.5e-43	1	1
FBpp0082817	Surp	PF01805.20	1.3e-44	1	2
FBpp0082817	Surp	PF01805.20	1.3e-44	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0083374	-	2558	-	FBpp0082817	784 (aa)	-	Q9VEP9

Gene Model

Click here to download FBgn0266917's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0266917's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0266917	Sf3a1	85	59.279	ENSG00000099995	SF3A1	79	61.654	Homo_sapiens
FBgn0266917	Sf3a1	86	68.151	ENSAPOG00000020465	sf3a1	83	61.582	Acanthochromis_polyacanthus
FBgn0266917	Sf3a1	85	59.279	ENSAMEG00000007737	SF3A1	79	61.495	Ailuropoda_melanoleuca
FBgn0266917	Sf3a1	87	66.667	ENSACIG00000020672	sf3a1	83	61.394	Amphilophus_citrinellus
FBgn0266917	Sf3a1	98	51.471	ENSAOCG00000003060	sf3a1	83	61.582	Amphiprion_ocellaris
FBgn0266917	Sf3a1	98	51.471	ENSAPEG00000010735	sf3a1	83	61.582	Amphiprion_percula
FBgn0266917	Sf3a1	82	60.444	ENSATEG00000021201	sf3a1	82	61.394	Anabas_testudineus
FBgn0266917	Sf3a1	68	60.482	ENSAPLG00000009057	SF3A1	66	60.291	Anas_platyrhynchos
FBgn0266917	Sf3a1	87	59.397	ENSACAG00000009415	SF3A1	80	61.131	Anolis_carolinensis
FBgn0266917	Sf3a1	85	59.386	ENSANAG00000032045	SF3A1	79	61.495	Aotus_nancymaae
FBgn0266917	Sf3a1	84	59.640	ENSACLG00000012622	sf3a1	83	61.321	Astatotilapia_calliptera
FBgn0266917	Sf3a1	85	59.279	ENSBTAG00000003390	SF3A1	79	61.466	Bos_taurus
FBgn0266917	Sf3a1	84	42.478	WBGene00004188	prp-21	90	41.210	Caenorhabditis_elegans
FBgn0266917	Sf3a1	85	59.386	ENSCJAG00000010370	SF3A1	79	61.495	Callithrix_jacchus
FBgn0266917	Sf3a1	85	59.279	ENSCAFG00000012559	SF3A1	79	61.495	Canis_familiaris
FBgn0266917	Sf3a1	85	59.279	ENSCAFG00020000838	SF3A1	79	61.495	Canis_lupus_dingo
FBgn0266917	Sf3a1	85	59.279	ENSCHIG00000018642	SF3A1	79	61.466	Capra_hircus
FBgn0266917	Sf3a1	85	59.279	ENSTSYG00000004739	SF3A1	79	61.495	Carlito_syrichta
FBgn0266917	Sf3a1	80	51.197	ENSCAPG00000015414	SF3A1	78	51.782	Cavia_aperea
FBgn0266917	Sf3a1	85	60.180	ENSCPOG00000014589	SF3A1	79	61.842	Cavia_porcellus
FBgn0266917	Sf3a1	85	59.386	ENSCCAG00000032006	SF3A1	79	61.495	Cebus_capucinus
FBgn0266917	Sf3a1	85	59.279	ENSCATG00000029241	SF3A1	83	60.387	Cercocebus_atys
FBgn0266917	Sf3a1	84	60.289	ENSCLAG00000006508	SF3A1	79	62.030	Chinchilla_lanigera
FBgn0266917	Sf3a1	85	59.279	ENSCSAG00000009470	SF3A1	83	60.387	Chlorocebus_sabaeus
FBgn0266917	Sf3a1	55	67.033	ENSCHOG00000005201	SF3A1	61	69.355	Choloepus_hoffmanni
FBgn0266917	Sf3a1	83	60.909	ENSCPBG00000007595	SF3A1	85	60.949	Chrysemys_picta_bellii
FBgn0266917	Sf3a1	96	44.000	ENSCING00000008526	-	84	50.092	Ciona_intestinalis
FBgn0266917	Sf3a1	85	59.672	ENSCSAVG00000005608	-	91	47.706	Ciona_savignyi
FBgn0266917	Sf3a1	85	59.279	ENSCANG00000033564	SF3A1	83	60.387	Colobus_angolensis_palliatus
FBgn0266917	Sf3a1	82	59.745	ENSCGRG00001008933	Sf3a1	79	61.308	Cricetulus_griseus_chok1gshd
FBgn0266917	Sf3a1	82	59.745	ENSCGRG00000006127	Sf3a1	79	61.308	Cricetulus_griseus_crigri
FBgn0266917	Sf3a1	82	60.000	ENSCSEG00000010792	sf3a1	80	61.132	Cynoglossus_semilaevis
FBgn0266917	Sf3a1	97	50.371	ENSCVAG00000004560	sf3a1	84	61.017	Cyprinodon_variegatus
FBgn0266917	Sf3a1	85	59.279	ENSDNOG00000010629	SF3A1	79	61.495	Dasypus_novemcinctus
FBgn0266917	Sf3a1	85	59.459	ENSDORG00000005613	Sf3a1	83	60.354	Dipodomys_ordii
FBgn0266917	Sf3a1	68	60.074	ENSETEG00000017194	SF3A1	71	61.582	Echinops_telfairi
FBgn0266917	Sf3a1	100	49.754	ENSEBUG00000001285	sf3a1	83	57.221	Eptatretus_burgeri
FBgn0266917	Sf3a1	85	59.279	ENSEASG00005010254	SF3A1	79	61.495	Equus_asinus_asinus
FBgn0266917	Sf3a1	85	59.279	ENSECAG00000023962	SF3A1	79	61.495	Equus_caballus
FBgn0266917	Sf3a1	72	56.505	ENSEEUG00000003159	SF3A1	78	57.834	Erinaceus_europaeus
FBgn0266917	Sf3a1	97	50.305	ENSELUG00000022578	sf3a1	79	61.205	Esox_lucius
FBgn0266917	Sf3a1	85	59.279	ENSFCAG00000011932	SF3A1	79	61.495	Felis_catus
FBgn0266917	Sf3a1	68	60.781	ENSFALG00000006944	SF3A1	77	60.766	Ficedula_albicollis
FBgn0266917	Sf3a1	85	60.000	ENSFDAG00000009560	SF3A1	79	61.869	Fukomys_damarensis
FBgn0266917	Sf3a1	82	59.704	ENSFHEG00000010866	sf3a1	84	61.017	Fundulus_heteroclitus
FBgn0266917	Sf3a1	84	59.279	ENSGMOG00000016024	sf3a1	95	52.659	Gadus_morhua
FBgn0266917	Sf3a1	68	60.595	ENSGALG00000007937	SF3A1	65	60.401	Gallus_gallus
FBgn0266917	Sf3a1	84	57.810	ENSGAFG00000009111	sf3a1	86	60.474	Gambusia_affinis
FBgn0266917	Sf3a1	68	59.594	ENSGACG00000011893	sf3a1	79	60.526	Gasterosteus_aculeatus
FBgn0266917	Sf3a1	79	60.909	ENSGAGG00000000762	SF3A1	84	60.949	Gopherus_agassizii
FBgn0266917	Sf3a1	85	59.279	ENSGGOG00000012631	SF3A1	79	61.654	Gorilla_gorilla
FBgn0266917	Sf3a1	99	50.361	ENSHBUG00000015795	sf3a1	83	61.321	Haplochromis_burtoni
FBgn0266917	Sf3a1	85	60.000	ENSHGLG00000007907	SF3A1	79	61.682	Heterocephalus_glaber_female
FBgn0266917	Sf3a1	85	60.000	ENSHGLG00100013799	SF3A1	79	61.682	Heterocephalus_glaber_male
FBgn0266917	Sf3a1	97	51.180	ENSHCOG00000015423	sf3a1	86	58.974	Hippocampus_comes
FBgn0266917	Sf3a1	97	51.361	ENSIPUG00000002470	sf3a1	87	61.090	Ictalurus_punctatus
FBgn0266917	Sf3a1	85	59.279	ENSSTOG00000013892	SF3A1	79	61.495	Ictidomys_tridecemlineatus
FBgn0266917	Sf3a1	84	59.567	ENSJJAG00000022566	Sf3a1	79	61.654	Jaculus_jaculus
FBgn0266917	Sf3a1	84	59.353	ENSKMAG00000002400	sf3a1	84	61.394	Kryptolebias_marmoratus
FBgn0266917	Sf3a1	84	59.927	ENSLACG00000003565	SF3A1	84	60.073	Latimeria_chalumnae
FBgn0266917	Sf3a1	51	69.014	ENSLOCG00000008251	sf3a1	85	59.964	Lepisosteus_oculatus
FBgn0266917	Sf3a1	83	42.752	ENSLAFG00000026032	-	81	43.948	Loxodonta_africana
FBgn0266917	Sf3a1	85	59.459	ENSLAFG00000000448	SF3A1	83	60.387	Loxodonta_africana
FBgn0266917	Sf3a1	85	59.571	ENSMFAG00000031979	SF3A1	83	60.211	Macaca_fascicularis
FBgn0266917	Sf3a1	85	59.571	ENSMMUG00000005547	SF3A1	83	60.211	Macaca_mulatta
FBgn0266917	Sf3a1	85	59.571	ENSMNEG00000037229	SF3A1	84	60.211	Macaca_nemestrina
FBgn0266917	Sf3a1	85	59.279	ENSMLEG00000041908	SF3A1	83	60.387	Mandrillus_leucophaeus
FBgn0266917	Sf3a1	50	69.858	ENSMAMG00000006460	sf3a1	83	61.770	Mastacembelus_armatus
FBgn0266917	Sf3a1	84	59.640	ENSMZEG00005009633	sf3a1	83	61.321	Maylandia_zebra
FBgn0266917	Sf3a1	68	60.595	ENSMGAG00000001330	SF3A1	67	60.401	Meleagris_gallopavo
FBgn0266917	Sf3a1	79	54.651	ENSMAUG00000020317	Sf3a1	79	56.238	Mesocricetus_auratus
FBgn0266917	Sf3a1	85	59.386	ENSMICG00000010038	SF3A1	83	60.494	Microcebus_murinus
FBgn0266917	Sf3a1	84	59.386	ENSMOCG00000008438	Sf3a1	79	61.495	Microtus_ochrogaster
FBgn0266917	Sf3a1	86	64.014	ENSMMOG00000015588	sf3a1	84	58.394	Mola_mola
FBgn0266917	Sf3a1	83	61.397	ENSMODG00000009270	SF3A1	82	60.474	Monodelphis_domestica
FBgn0266917	Sf3a1	82	59.889	ENSMALG00000000148	sf3a1	87	60.155	Monopterus_albus
FBgn0266917	Sf3a1	84	59.567	MGP_CAROLIEiJ_G0016029	Sf3a1	79	61.495	Mus_caroli
FBgn0266917	Sf3a1	84	59.567	ENSMUSG00000002129	Sf3a1	79	61.495	Mus_musculus
FBgn0266917	Sf3a1	84	59.567	MGP_PahariEiJ_G0016862	Sf3a1	79	61.495	Mus_pahari
FBgn0266917	Sf3a1	84	59.567	MGP_SPRETEiJ_G0016870	Sf3a1	79	61.495	Mus_spretus
FBgn0266917	Sf3a1	85	60.323	ENSMPUG00000013144	SF3A1	83	60.387	Mustela_putorius_furo
FBgn0266917	Sf3a1	85	59.279	ENSMLUG00000002139	SF3A1	79	61.495	Myotis_lucifugus
FBgn0266917	Sf3a1	84	59.567	ENSNGAG00000016977	Sf3a1	79	61.654	Nannospalax_galili
FBgn0266917	Sf3a1	97	50.918	ENSNBRG00000016642	sf3a1	83	61.321	Neolamprologus_brichardi
FBgn0266917	Sf3a1	85	59.279	ENSNLEG00000003686	SF3A1	83	60.387	Nomascus_leucogenys
FBgn0266917	Sf3a1	85	59.206	ENSOPRG00000016636	SF3A1	79	61.466	Ochotona_princeps
FBgn0266917	Sf3a1	83	61.070	ENSODEG00000002571	SF3A1	79	61.869	Octodon_degus
FBgn0266917	Sf3a1	99	49.522	ENSONIG00000010848	sf3a1	83	60.943	Oreochromis_niloticus
FBgn0266917	Sf3a1	85	59.386	ENSOCUG00000007633	SF3A1	79	61.495	Oryctolagus_cuniculus
FBgn0266917	Sf3a1	81	59.319	ENSORLG00000013050	sf3a1	84	60.766	Oryzias_latipes
FBgn0266917	Sf3a1	86	68.385	ENSOMEG00000013362	sf3a1	85	59.781	Oryzias_melastigma
FBgn0266917	Sf3a1	85	59.099	ENSOGAG00000012931	SF3A1	79	61.495	Otolemur_garnettii
FBgn0266917	Sf3a1	85	59.025	ENSOARG00000006849	SF3A1	82	61.205	Ovis_aries
FBgn0266917	Sf3a1	85	59.279	ENSPPAG00000041790	SF3A1	79	61.654	Pan_paniscus
FBgn0266917	Sf3a1	85	59.279	ENSPPRG00000004391	SF3A1	79	61.495	Panthera_pardus
FBgn0266917	Sf3a1	85	59.279	ENSPTIG00000000844	SF3A1	81	61.278	Panthera_tigris_altaica
FBgn0266917	Sf3a1	85	59.279	ENSPTRG00000014240	SF3A1	79	61.654	Pan_troglodytes
FBgn0266917	Sf3a1	85	59.279	ENSPANG00000020772	SF3A1	83	60.387	Papio_anubis
FBgn0266917	Sf3a1	80	61.121	ENSPSIG00000012803	SF3A1	91	61.959	Pelodiscus_sinensis
FBgn0266917	Sf3a1	82	59.444	ENSPMGG00000023096	sf3a1	83	60.788	Periophthalmus_magnuspinnatus
FBgn0266917	Sf3a1	82	60.332	ENSPEMG00000009494	Sf3a1	79	61.495	Peromyscus_maniculatus_bairdii
FBgn0266917	Sf3a1	68	59.489	ENSPMAG00000007139	-	88	59.091	Petromyzon_marinus
FBgn0266917	Sf3a1	83	61.397	ENSPCIG00000022692	SF3A1	80	61.654	Phascolarctos_cinereus
FBgn0266917	Sf3a1	79	54.464	ENSPFOG00000016768	sf3a1	82	54.545	Poecilia_formosa
FBgn0266917	Sf3a1	84	58.303	ENSPLAG00000017268	sf3a1	84	60.640	Poecilia_latipinna
FBgn0266917	Sf3a1	85	47.559	ENSPMEG00000019811	sf3a1	61	59.910	Poecilia_mexicana
FBgn0266917	Sf3a1	99	50.367	ENSPREG00000010347	sf3a1	84	60.829	Poecilia_reticulata
FBgn0266917	Sf3a1	85	59.279	ENSPPYG00000011707	SF3A1	83	60.387	Pongo_abelii
FBgn0266917	Sf3a1	85	59.386	ENSPCOG00000026630	SF3A1	83	60.317	Propithecus_coquereli
FBgn0266917	Sf3a1	81	59.735	ENSPVAG00000017719	SF3A1	79	61.017	Pteropus_vampyrus
FBgn0266917	Sf3a1	99	50.719	ENSPNYG00000018706	sf3a1	83	61.321	Pundamilia_nyererei
FBgn0266917	Sf3a1	70	59.180	ENSPNAG00000003721	sf3a1	66	60.656	Pygocentrus_nattereri
FBgn0266917	Sf3a1	84	59.640	ENSRNOG00000005218	Sf3a1	83	60.000	Rattus_norvegicus
FBgn0266917	Sf3a1	85	60.000	ENSRBIG00000032167	SF3A1	84	60.563	Rhinopithecus_bieti
FBgn0266917	Sf3a1	85	60.000	ENSRROG00000044908	SF3A1	83	60.563	Rhinopithecus_roxellana
FBgn0266917	Sf3a1	80	58.801	ENSSBOG00000021960	SF3A1	82	60.132	Saimiri_boliviensis_boliviensis
FBgn0266917	Sf3a1	82	59.300	ENSSHAG00000003666	SF3A1	82	58.394	Sarcophilus_harrisii
FBgn0266917	Sf3a1	83	59.420	ENSSFOG00015004579	sf3a1	86	60.727	Scleropages_formosus
FBgn0266917	Sf3a1	82	60.370	ENSSMAG00000004275	sf3a1	81	60.566	Scophthalmus_maximus
FBgn0266917	Sf3a1	87	67.905	ENSSDUG00000022219	sf3a1	83	61.509	Seriola_dumerili
FBgn0266917	Sf3a1	87	67.905	ENSSLDG00000012642	sf3a1	83	61.509	Seriola_lalandi_dorsalis
FBgn0266917	Sf3a1	85	54.955	ENSSARG00000005960	SF3A1	81	57.331	Sorex_araneus
FBgn0266917	Sf3a1	83	61.410	ENSSPUG00000018863	SF3A1	80	61.131	Sphenodon_punctatus
FBgn0266917	Sf3a1	85	60.323	ENSSSCG00000010002	SF3A1	79	61.682	Sus_scrofa
FBgn0266917	Sf3a1	68	60.781	ENSTGUG00000010547	SF3A1	67	60.584	Taeniopygia_guttata
FBgn0266917	Sf3a1	85	58.633	ENSTRUG00000006118	sf3a1	85	59.963	Takifugu_rubripes
FBgn0266917	Sf3a1	85	56.937	ENSTBEG00000012771	SF3A1	79	59.065	Tupaia_belangeri
FBgn0266917	Sf3a1	85	59.173	ENSTTRG00000001535	SF3A1	79	61.351	Tursiops_truncatus
FBgn0266917	Sf3a1	85	58.897	ENSUAMG00000006750	SF3A1	78	61.495	Ursus_americanus
FBgn0266917	Sf3a1	85	59.279	ENSUMAG00000016665	SF3A1	81	61.394	Ursus_maritimus
FBgn0266917	Sf3a1	85	59.279	ENSVVUG00000003075	SF3A1	79	61.495	Vulpes_vulpes
FBgn0266917	Sf3a1	83	60.846	ENSXETG00000016144	sf3a1	80	69.524	Xenopus_tropicalis
FBgn0266917	Sf3a1	99	49.758	ENSXCOG00000015653	sf3a1	84	61.017	Xiphophorus_couchianus
FBgn0266917	Sf3a1	84	57.829	ENSXMAG00000002753	sf3a1	84	61.205	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000278	mitotic cell cycle	18463163.	HMP	Process
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	15492211.	HMP	Process
GO:0000398	mRNA splicing, via spliceosome	18981222.	IC	Process
GO:0000398	mRNA splicing, via spliceosome	10908584.	ISS	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	ISS	Function
GO:0005634	nucleus	15492211.	IC	Component
GO:0005686	U2 snRNP	21873635.	IBA	Component
GO:0005686	U2 snRNP	10908584.	ISS	Component
GO:0007283	spermatogenesis	27035939.	IMP	Process
GO:0071004	U2-type prespliceosome	21873635.	IBA	Component
GO:0071011	precatalytic spliceosome	18981222.	HDA	Component
GO:0071013	catalytic step 2 spliceosome	18981222.	HDA	Component
GO:0071013	catalytic step 2 spliceosome	21873635.	IBA	Component