EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0267790 (Gene tree)
Gene ID: 41138
Gene Symbol: rump
Alias: -
Full Name: rumpelstiltskin
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 4472 bases
Position: chr3R:9505853-9510324
Accession: FBgn0267790
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0081601	RRM_1	PF00076.22	8.3e-51	1	3
FBpp0081601	RRM_1	PF00076.22	8.3e-51	2	3
FBpp0081601	RRM_1	PF00076.22	8.3e-51	3	3
FBpp0293226	RRM_1	PF00076.22	7.1e-21	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0304684	-	2219	-	FBpp0293226	214 (aa)	-	A0A0B4K6Z1
FBtr0082123	-	2358	-	FBpp0081601	632 (aa)	-	Q8MSI9

Gene Model

Click here to download FBgn0267790's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0267790's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0267790	rump	54	53.409	ENSCING00000003046	-	55	53.409	Ciona_intestinalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000278	mitotic cell cycle	18463163.	HMP	Process
GO:0000790	nuclear chromatin	10984439.	IDA	Component
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0003729	mRNA binding	15781475.	IDA	Function
GO:0003729	mRNA binding	10908586.	ISS	Function
GO:0003730	mRNA 3'-UTR binding	18234721.21752933.	IDA	Function
GO:0003730	mRNA 3'-UTR binding	11700288.	TAS	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	18234721.	IDA	Component
GO:0005654	nucleoplasm	25294944.	HDA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	18234721.	IDA	Component
GO:0007277	pole cell development	21752933.	IGI	Process
GO:0008298	intracellular mRNA localization	18234721.	IMP	Process
GO:0008595	anterior/posterior axis specification, embryo	18234721.	IMP	Process
GO:0009952	anterior/posterior pattern specification	21752933.	IGI	Process
GO:0035062	omega speckle	10984439.	IDA	Component
GO:0035282	segmentation	20937269.	IGI	Process
GO:0045451	pole plasm oskar mRNA localization	21752933.	IGI	Process
GO:0071014	post-mRNA release spliceosomal complex	21873635.	IBA	Component
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component
GO:1990904	ribonucleoprotein complex	21752933.	IDA	Component
GO:2000815	regulation of mRNA stability involved in response to oxidative stress	21873635.	IBA	Process