EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0283477 (Gene tree)
Gene ID: 53443
Gene Symbol: SF2
Alias: -
Full Name: Splicing factor 2
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Minus strand
Length: 3046 bases
Position: chr3R:16338943-16341988
Accession: FBgn0283477
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0082724	RRM_1	PF00076.22	1.2e-29	1	2
FBpp0082724	RRM_1	PF00076.22	1.2e-29	2	2
FBpp0293269	RRM_1	PF00076.22	1.2e-29	1	2
FBpp0293269	RRM_1	PF00076.22	1.2e-29	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0083272	-	1392	-	FBpp0082724	255 (aa)	-	Q9V3W7
FBtr0304727	-	2576	-	FBpp0293269	255 (aa)	-	Q9V3W7

Gene Model

Click here to download FBgn0283477's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0283477's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
FBgn0283477	SF2	66	41.243	FBgn0004587	B52	95	37.121

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0283477	SF2	68	66.857	ENSACIG00000002623	-	90	67.429	Amphilophus_citrinellus
FBgn0283477	SF2	73	68.280	ENSACLG00000005676	-	73	68.280	Astatotilapia_calliptera
FBgn0283477	SF2	73	67.368	ENSACLG00000021693	-	76	64.737	Astatotilapia_calliptera
FBgn0283477	SF2	74	59.487	WBGene00004700	rsp-3	76	59.487	Caenorhabditis_elegans
FBgn0283477	SF2	74	61.979	ENSCING00000007375	-	81	59.391	Ciona_intestinalis
FBgn0283477	SF2	53	58.865	ENSCING00000000257	-	77	60.284	Ciona_intestinalis
FBgn0283477	SF2	71	62.295	ENSCSAVG00000006093	-	94	58.947	Ciona_savignyi
FBgn0283477	SF2	53	61.481	ENSCSAVG00000003567	-	76	62.687	Ciona_savignyi
FBgn0283477	SF2	73	69.730	ENSEBUG00000009582	-	78	67.568	Eptatretus_burgeri
FBgn0283477	SF2	73	67.204	ENSFHEG00000017425	-	92	66.857	Fundulus_heteroclitus
FBgn0283477	SF2	69	66.854	ENSGMOG00000010606	-	90	67.429	Gadus_morhua
FBgn0283477	SF2	73	68.280	ENSGAFG00000012721	-	73	68.817	Gambusia_affinis
FBgn0283477	SF2	73	68.449	ENSGAFG00000000609	-	75	68.449	Gambusia_affinis
FBgn0283477	SF2	68	67.429	ENSGACG00000011094	-	91	68.000	Gasterosteus_aculeatus
FBgn0283477	SF2	73	67.196	ENSHBUG00000015576	-	76	66.138	Haplochromis_burtoni
FBgn0283477	SF2	73	66.138	ENSHCOG00000008016	-	73	64.550	Hippocampus_comes
FBgn0283477	SF2	73	66.667	ENSMFAG00000034223	-	61	66.667	Macaca_fascicularis
FBgn0283477	SF2	73	68.280	ENSMZEG00005007947	-	73	68.280	Maylandia_zebra
FBgn0283477	SF2	73	66.489	ENSMZEG00005019071	-	93	66.102	Maylandia_zebra
FBgn0283477	SF2	73	66.842	ENSMMOG00000018849	-	74	66.667	Mola_mola
FBgn0283477	SF2	73	67.368	ENSNBRG00000008134	-	73	66.842	Neolamprologus_brichardi
FBgn0283477	SF2	73	68.280	ENSNBRG00000019981	-	73	68.280	Neolamprologus_brichardi
FBgn0283477	SF2	64	59.259	ENSOPRG00000004745	-	92	57.407	Ochotona_princeps
FBgn0283477	SF2	73	66.492	ENSONIG00000004857	-	75	66.492	Oreochromis_niloticus
FBgn0283477	SF2	64	38.182	ENSOCUG00000026856	-	91	39.759	Oryctolagus_cuniculus
FBgn0283477	SF2	73	67.204	ENSORLG00000005314	-	71	67.204	Oryzias_latipes
FBgn0283477	SF2	73	67.204	ENSORLG00015015497	-	71	67.204	Oryzias_latipes_hsok
FBgn0283477	SF2	73	67.553	ENSOMEG00000017711	-	71	68.085	Oryzias_melastigma
FBgn0283477	SF2	69	67.416	ENSPLAG00000019613	-	68	68.571	Poecilia_latipinna
FBgn0283477	SF2	73	67.204	ENSPLAG00000019553	-	85	68.571	Poecilia_latipinna
FBgn0283477	SF2	73	68.280	ENSPREG00000016792	-	75	67.742	Poecilia_reticulata
FBgn0283477	SF2	73	68.280	ENSPNYG00000017115	-	73	68.280	Pundamilia_nyererei
FBgn0283477	SF2	73	67.368	ENSPNYG00000020651	-	73	65.789	Pundamilia_nyererei
FBgn0283477	SF2	73	69.355	ENSSFOG00015004989	-	67	67.914	Scleropages_formosus
FBgn0283477	SF2	73	65.482	ENSSDUG00000003887	-	75	65.990	Seriola_dumerili
FBgn0283477	SF2	73	67.204	ENSTRUG00000017058	-	75	68.280	Takifugu_rubripes
FBgn0283477	SF2	73	63.102	ENSTNIG00000009993	-	75	65.241	Tetraodon_nigroviridis
FBgn0283477	SF2	73	68.280	ENSXCOG00000017888	-	78	67.742	Xiphophorus_couchianus
FBgn0283477	SF2	73	67.204	ENSXCOG00000009643	-	75	67.742	Xiphophorus_couchianus
FBgn0283477	SF2	73	67.742	ENSXMAG00000010797	-	75	67.742	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	25414008.	IMP	Process
GO:0000398	mRNA splicing, via spliceosome	18981222.	IC	Process
GO:0001178	regulation of transcriptional start site selection at RNA polymerase II promoter	25414008.	IMP	Process
GO:0003677	DNA binding	8769651.	IDA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003729	mRNA binding	25414008.	IDA	Function
GO:0003729	mRNA binding	10908586.	ISS	Function
GO:0005515	protein binding	8124712.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	8769651.12134081.	IDA	Component
GO:0006405	RNA export from nucleus	28677678.	IMP	Process
GO:0010468	regulation of gene expression	25414008.	IMP	Process
GO:0016607	nuclear speck	21873635.	IBA	Component
GO:0031440	regulation of mRNA 3'-end processing	25414008.	IMP	Process
GO:0045292	mRNA cis splicing, via spliceosome	21873635.	IBA	Process
GO:0071011	precatalytic spliceosome	18981222.	HDA	Component
GO:0071013	catalytic step 2 spliceosome	18981222.	HDA	Component