EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_129S1SvImJ_G0017486 (Gene tree)
Gene ID: -
Gene Symbol: Cirbp
Alias: Cirp|R74941
Full Name: cold inducible RNA binding protein
Gene Type: protein_coding
Species: Mus_musculus_129s1svimj
Status: putative
Strand: Plus strand
Length: 7197 bases
Position: chr10:80751266-80758462
Accession: 893588
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_129S1SvImJ_P0026202	RRM_1	PF00076.22	5.1e-26	1	1
MGP_129S1SvImJ_P0026204	RRM_1	PF00076.22	1.2e-25	1	1
MGP_129S1SvImJ_P0026203	RRM_1	PF00076.22	1.3e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_129S1SvImJ_T0026206	-	912	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0026207	-	894	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0026204	-	835	-	MGP_129S1SvImJ_P0026204	168 (aa)	-	-
MGP_129S1SvImJ_T0026205	-	376	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0026202	-	423	XM_006513164	MGP_129S1SvImJ_P0026202	108 (aa)	XP_006513227	P60824
MGP_129S1SvImJ_T0026203	-	1321	-	MGP_129S1SvImJ_P0026203	172 (aa)	-	-
MGP_129S1SvImJ_T0026208	-	593	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_129S1SvImJ_G0017486's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_129S1SvImJ_G0017486's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_129S1SvImJ_G0017486	Cirbp	85	40.244	MGP_129S1SvImJ_G0033083	Tial1	67	40.244
MGP_129S1SvImJ_G0017486	Cirbp	76	37.500	MGP_129S1SvImJ_G0028445	Elavl2	64	37.500
MGP_129S1SvImJ_G0017486	Cirbp	68	34.247	MGP_129S1SvImJ_G0021397	Pspc1	69	41.304
MGP_129S1SvImJ_G0017486	Cirbp	78	40.476	MGP_129S1SvImJ_G0026952	Rbm38	74	38.043
MGP_129S1SvImJ_G0017486	Cirbp	79	63.529	MGP_129S1SvImJ_G0035748	Rbmx	83	63.529
MGP_129S1SvImJ_G0017486	Cirbp	87	40.351	MGP_129S1SvImJ_G0029969	Msi1	51	38.983
MGP_129S1SvImJ_G0017486	Cirbp	91	39.759	MGP_129S1SvImJ_G0026834	Pabpc1l	53	39.759
MGP_129S1SvImJ_G0017486	Cirbp	88	43.243	MGP_129S1SvImJ_G0018924	Msi2	61	41.429
MGP_129S1SvImJ_G0017486	Cirbp	99	60.588	MGP_129S1SvImJ_G0035541	Rbm3	100	63.529
MGP_129S1SvImJ_G0017486	Cirbp	83	37.931	MGP_129S1SvImJ_G0029780	Hnrnpd	68	37.931
MGP_129S1SvImJ_G0017486	Cirbp	73	36.709	MGP_129S1SvImJ_G0029782	Hnrnpdl	54	36.709
MGP_129S1SvImJ_G0017486	Cirbp	94	54.783	MGP_129S1SvImJ_G0033806	-	81	54.545
MGP_129S1SvImJ_G0017486	Cirbp	91	35.714	MGP_129S1SvImJ_G0030975	Tia1	80	37.778
MGP_129S1SvImJ_G0017486	Cirbp	92	42.105	MGP_129S1SvImJ_G0017492	Dazap1	74	47.273
MGP_129S1SvImJ_G0017486	Cirbp	70	44.737	MGP_129S1SvImJ_G0030734	Hnrnpa2b1	50	44.737
MGP_129S1SvImJ_G0017486	Cirbp	82	33.333	MGP_129S1SvImJ_G0033333	Elavl1	75	33.333
MGP_129S1SvImJ_G0017486	Cirbp	80	32.558	MGP_129S1SvImJ_G0025332	Celf2	82	33.333
MGP_129S1SvImJ_G0017486	Cirbp	84	38.889	MGP_129S1SvImJ_G0028576	Elavl4	70	38.889
MGP_129S1SvImJ_G0017486	Cirbp	84	31.868	MGP_129S1SvImJ_G0026813	Srsf6	61	31.868
MGP_129S1SvImJ_G0017486	Cirbp	79	37.500	MGP_129S1SvImJ_G0034474	Elavl3	62	37.500
MGP_129S1SvImJ_G0017486	Cirbp	94	38.614	MGP_129S1SvImJ_G0020627	Hnrnpa0	56	43.421
MGP_129S1SvImJ_G0017486	Cirbp	85	38.043	MGP_129S1SvImJ_G0022725	Ncbp2	54	36.471