EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_129S1SvImJ_G0017759 (Gene tree)
Gene ID: -
Gene Symbol: Cpsf6
Alias: 4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7
Full Name: cleavage and polyadenylation specific factor 6
Gene Type: protein_coding
Species: Mus_musculus_129s1svimj
Status: putative
Strand: Minus strand
Length: 37190 bases
Position: chr10:120245721-120282910
Accession: 1913948
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_129S1SvImJ_P0027165	RRM_1	PF00076.22	2.1e-06	1	1
MGP_129S1SvImJ_P0027169	RRM_1	PF00076.22	2.1e-06	1	1
MGP_129S1SvImJ_P0027166	RRM_1	PF00076.22	2.1e-06	1	1
MGP_129S1SvImJ_P0027167	RRM_1	PF00076.22	2.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_129S1SvImJ_T0027172	-	377	-	MGP_129S1SvImJ_P0027172	91 (aa)	-	-
MGP_129S1SvImJ_T0027171	-	2749	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0027170	-	449	-	MGP_129S1SvImJ_P0027170	38 (aa)	-	-
MGP_129S1SvImJ_T0027165	-	6526	XM_006513851	MGP_129S1SvImJ_P0027165	551 (aa)	XP_006513914	Q6NVF9
MGP_129S1SvImJ_T0027166	-	2200	-	MGP_129S1SvImJ_P0027166	552 (aa)	-	-
MGP_129S1SvImJ_T0027167	-	2227	-	MGP_129S1SvImJ_P0027167	588 (aa)	-	-
MGP_129S1SvImJ_T0027168	-	717	-	MGP_129S1SvImJ_P0027168	182 (aa)	-	-
MGP_129S1SvImJ_T0027169	-	3819	-	MGP_129S1SvImJ_P0027169	551 (aa)	-	-

Gene Model

Click here to download MGP_129S1SvImJ_G0017759's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_129S1SvImJ_G0017759's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_129S1SvImJ_G0017759	Cpsf6	65	55.385	MGP_129S1SvImJ_G0024847	Cpsf7	71	58.857