EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_129S1SvImJ_G0018018 (Gene tree)
Gene ID: -
Gene Symbol: Ddx56
Alias: 2600001H07Rik|D11Ertd619e|NOH61|Noh61
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 56
Gene Type: protein_coding
Species: Mus_musculus_129s1svimj
Status: putative
Strand: Minus strand
Length: 8851 bases
Position: chr11:3352735-3361585
Accession: 1277172
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_129S1SvImJ_P0027968	ResIII	PF04851.15	9.5e-07	1	1
MGP_129S1SvImJ_P0027968	DEAD	PF00270.29	6.9e-40	1	1
MGP_129S1SvImJ_P0027970	DEAD	PF00270.29	5.8e-33	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_129S1SvImJ_T0027968	-	1956	XM_011243731	MGP_129S1SvImJ_P0027968	546 (aa)	XP_011242033	Q9D0R4
MGP_129S1SvImJ_T0027969	-	527	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0027971	-	621	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0027970	-	764	-	MGP_129S1SvImJ_P0027970	237 (aa)	-	-

Gene Model

Click here to download MGP_129S1SvImJ_G0018018's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_129S1SvImJ_G0018018's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_129S1SvImJ_G0018018	Ddx56	98	33.065	MGP_129S1SvImJ_G0026906	Ddx27	53	31.019
MGP_129S1SvImJ_G0018018	Ddx56	66	30.789	MGP_129S1SvImJ_G0016921	D1Pas1	52	30.159
MGP_129S1SvImJ_G0018018	Ddx56	66	30.366	MGP_129S1SvImJ_G0035571	Ddx3x	52	30.000
MGP_129S1SvImJ_G0018018	Ddx56	97	30.328	MGP_129S1SvImJ_G0022678	Eif4a2	63	30.736
MGP_129S1SvImJ_G0018018	Ddx56	80	33.493	MGP_129S1SvImJ_G0018863	Ddx52	61	30.597
MGP_129S1SvImJ_G0018018	Ddx56	82	50.000	MGP_129S1SvImJ_G0019605	Ddx1	53	50.847
MGP_129S1SvImJ_G0018018	Ddx56	83	33.981	MGP_129S1SvImJ_G0034714	Ddx6	74	30.025
MGP_129S1SvImJ_G0018018	Ddx56	94	32.627	MGP_129S1SvImJ_G0033699	Ddx49	59	33.175
MGP_129S1SvImJ_G0018018	Ddx56	99	35.887	MGP_129S1SvImJ_G0031412	Ddx47	86	38.889
MGP_129S1SvImJ_G0018018	Ddx56	97	30.041	MGP_129S1SvImJ_G0018546	Eif4a1	60	30.435
MGP_129S1SvImJ_G0018018	Ddx56	93	30.859	MGP_129S1SvImJ_G0034132	Ddx19a	69	31.034
MGP_129S1SvImJ_G0018018	Ddx56	61	32.051	MGP_129S1SvImJ_G0033839	Ddx39	74	34.969