EuRBPDB

Description

Ensembl ID: MGP_129S1SvImJ_G0018249 (Gene tree)
Gene ID: -
Gene Symbol: Hnrnph1
Alias: AI642080|E430005G16Rik|Hnrnph|Hnrph|Hnrph1|Hnrph1 {ECO:0000313|EMBL:AAH42187.2,GN ECO:0000313|MGI:MGI:1891925}
Full Name: heterogeneous nuclear ribonucleoprotein H1
Gene Type: protein_coding
Species: Mus_musculus_129s1svimj
Status: putative
Strand: Plus strand
Length: 9539 bases
Position: chr11:49557330-49566868
Accession: 1891925
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_129S1SvImJ_P0028865	zf-RNPHF	PF08080.12	1.3e-22	1	1
MGP_129S1SvImJ_P0028865	RRM_1	PF00076.22	2.1e-32	1	3
MGP_129S1SvImJ_P0028865	RRM_1	PF00076.22	2.1e-32	2	3
MGP_129S1SvImJ_P0028865	RRM_1	PF00076.22	2.1e-32	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_129S1SvImJ_T0028876	-	163	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0028875	-	582	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0028877	-	159	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0028865	-	2427	XM_006533875	MGP_129S1SvImJ_P0028865	449 (aa)	XP_006533938	O35737
MGP_129S1SvImJ_T0028866	-	4097	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0028867	-	581	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0028873	-	1724	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0028872	-	582	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0028871	-	860	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0028870	-	1116	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0028874	-	832	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0028868	-	4002	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0028869	-	870	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_129S1SvImJ_G0018249	Hnrnph1	80	64.638	MGP_129S1SvImJ_G0031180	Hnrnpf	99	64.638
MGP_129S1SvImJ_G0018249	Hnrnph1	60	64.474	MGP_129S1SvImJ_G0029711	Grsf1	92	65.333
MGP_129S1SvImJ_G0018249	Hnrnph1	78	33.333	MGP_129S1SvImJ_G0028061	Rbm12b1	64	34.314
MGP_129S1SvImJ_G0018249	Hnrnph1	100	94.878	MGP_129S1SvImJ_G0027044	Hnrnph2	100	94.878
MGP_129S1SvImJ_G0018249	Hnrnph1	90	60.923	MGP_129S1SvImJ_G0017310	Hnrnph3	91	63.609