EuRBPDB

Description

Ensembl ID: MGP_129S1SvImJ_G0018269 (Gene tree)
Gene ID: -
Gene Symbol: Hnrnpab
Alias: 3010025C11Rik|CBF-A|Cbf-a|Cgbfa|Hnrpab|Hnrpab {ECO:0000313|EMBL:EDL33661.1,GN ECO:0000313|MGI:MGI:1330294}|Hnrpab {ECO:0000313|EMBL:EDL33663.1,GN ECO:0000313|MGI:MGI:1330294}
Full Name: heterogeneous nuclear ribonucleoprotein A/B
Gene Type: protein_coding
Species: Mus_musculus_129s1svimj
Status: putative
Strand: Minus strand
Length: 6745 bases
Position: chr11:50847671-50854415
Accession: 1330294
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_129S1SvImJ_P0028945	CBFNT	PF08143.11	3.2e-19	1	1
MGP_129S1SvImJ_P0028946	CBFNT	PF08143.11	3.7e-19	1	1
MGP_129S1SvImJ_P0028947	CBFNT	PF08143.11	4.2e-19	1	1
MGP_129S1SvImJ_P0028945	RRM_1	PF00076.22	6.4e-34	1	2
MGP_129S1SvImJ_P0028945	RRM_1	PF00076.22	6.4e-34	2	2
MGP_129S1SvImJ_P0028946	RRM_1	PF00076.22	8.5e-34	1	2
MGP_129S1SvImJ_P0028946	RRM_1	PF00076.22	8.5e-34	2	2
MGP_129S1SvImJ_P0028947	RRM_1	PF00076.22	1e-33	1	2
MGP_129S1SvImJ_P0028947	RRM_1	PF00076.22	1e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_129S1SvImJ_T0028947	-	1437	-	MGP_129S1SvImJ_P0028947	332 (aa)	-	-
MGP_129S1SvImJ_T0028946	-	2013	-	MGP_129S1SvImJ_P0028946	311 (aa)	-	-
MGP_129S1SvImJ_T0028945	-	2370	-	MGP_129S1SvImJ_P0028945	285 (aa)	-	Q99020

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_129S1SvImJ_G0018269	Hnrnpab	70	48.039	MGP_129S1SvImJ_G0018924	Msi2	100	52.212
MGP_129S1SvImJ_G0018269	Hnrnpab	61	36.723	MGP_129S1SvImJ_G0022435	Hnrnpa1	63	33.333
MGP_129S1SvImJ_G0018269	Hnrnpab	79	40.800	MGP_129S1SvImJ_G0029969	Msi1	58	48.052
MGP_129S1SvImJ_G0018269	Hnrnpab	67	40.351	MGP_129S1SvImJ_G0017492	Dazap1	99	40.588
MGP_129S1SvImJ_G0018269	Hnrnpab	82	32.099	MGP_129S1SvImJ_G0029129	Tardbp	86	33.146
MGP_129S1SvImJ_G0018269	Hnrnpab	65	31.414	MGP_129S1SvImJ_G0034902	Celf6	66	32.500
MGP_129S1SvImJ_G0018269	Hnrnpab	77	70.183	MGP_129S1SvImJ_G0029780	Hnrnpd	97	70.616
MGP_129S1SvImJ_G0018269	Hnrnpab	69	36.220	MGP_129S1SvImJ_G0033806	-	53	47.917
MGP_129S1SvImJ_G0018269	Hnrnpab	64	37.368	MGP_129S1SvImJ_G0030734	Hnrnpa2b1	61	38.068
MGP_129S1SvImJ_G0018269	Hnrnpab	82	58.419	MGP_129S1SvImJ_G0029782	Hnrnpdl	89	57.292
MGP_129S1SvImJ_G0018269	Hnrnpab	51	33.846	MGP_129S1SvImJ_G0019988	Slirp	73	33.846
MGP_129S1SvImJ_G0018269	Hnrnpab	53	33.333	MGP_129S1SvImJ_G0033333	Elavl1	50	33.333
MGP_129S1SvImJ_G0018269	Hnrnpab	57	35.882	MGP_129S1SvImJ_G0020627	Hnrnpa0	58	35.882