EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_129S1SvImJ_G0018528 (Gene tree)
Gene ID: -
Gene Symbol: Chd3
Alias: 2600010P09Rik|AF020312|Chd7|Mi-2 alpha|Prp7|Prp9-1
Full Name: chromodomain helicase DNA binding protein 3
Gene Type: protein_coding
Species: Mus_musculus_129s1svimj
Status: putative
Strand: Minus strand
Length: 27436 bases
Position: chr11:69767444-69794879
Accession: 1344395
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_129S1SvImJ_P0029963	ResIII	PF04851.15	3.4e-08	1	1
MGP_129S1SvImJ_P0029962	ResIII	PF04851.15	3.9e-08	1	1
MGP_129S1SvImJ_P0029961	ResIII	PF04851.15	4e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_129S1SvImJ_T0029962	-	5999	-	MGP_129S1SvImJ_P0029962	1998 (aa)	-	-
MGP_129S1SvImJ_T0029963	-	5657	-	MGP_129S1SvImJ_P0029963	1885 (aa)	-	-
MGP_129S1SvImJ_T0029960	-	1879	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0029961	-	7176	-	MGP_129S1SvImJ_P0029961	2032 (aa)	-	-
MGP_129S1SvImJ_T0029966	-	591	-	MGP_129S1SvImJ_P0029966	196 (aa)	-	-
MGP_129S1SvImJ_T0029967	-	453	-	MGP_129S1SvImJ_P0029967	151 (aa)	-	-
MGP_129S1SvImJ_T0029964	-	747	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0029965	-	432	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0029968	-	430	-	MGP_129S1SvImJ_P0029968	143 (aa)	-	-
MGP_129S1SvImJ_T0029959	-	2150	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_129S1SvImJ_G0018528's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_129S1SvImJ_G0018528's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_129S1SvImJ_G0018528	Chd3	91	80.841	MGP_129S1SvImJ_G0031285	Chd4	95	70.529
MGP_129S1SvImJ_G0018528	Chd3	95	71.106	MGP_129S1SvImJ_G0029181	Chd5	97	70.305