EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_129S1SvImJ_G0019167 (Gene tree)
Gene ID: -
Gene Symbol: Rab5c
Alias: AI326010|Rab5C|Rabl
Full Name: RAB5C%2C member RAS oncogene family
Gene Type: protein_coding
Species: Mus_musculus_129s1svimj
Status: putative
Strand: Minus strand
Length: 30311 bases
Position: chr11:103480507-103510817
Accession: 105306
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_129S1SvImJ_P0032414	MMR_HSR1	PF01926.23	0.00021	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_129S1SvImJ_T0032416	-	412	-	MGP_129S1SvImJ_P0032416	83 (aa)	-	-
MGP_129S1SvImJ_T0032417	-	441	-	MGP_129S1SvImJ_P0032417	34 (aa)	-	-
MGP_129S1SvImJ_T0032414	-	1915	XM_006532586	MGP_129S1SvImJ_P0032414	216 (aa)	XP_006532649	P35278
MGP_129S1SvImJ_T0032415	-	1967	-	MGP_129S1SvImJ_P0032415	234 (aa)	-	-

Gene Model

Click here to download MGP_129S1SvImJ_G0019167's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_129S1SvImJ_G0019167's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_129S1SvImJ_G0019167	Rab5c	81	33.702	MGP_129S1SvImJ_G0033214	Hras	94	33.702
MGP_129S1SvImJ_G0019167	Rab5c	89	41.089	MGP_129S1SvImJ_G0027400	Rab25	93	41.089
MGP_129S1SvImJ_G0019167	Rab5c	98	40.845	MGP_129S1SvImJ_G0019371	Rab37	95	40.845
MGP_129S1SvImJ_G0019167	Rab5c	78	32.544	MGP_129S1SvImJ_G0031586	Rasl2-9	77	32.544
MGP_129S1SvImJ_G0019167	Rab5c	75	45.062	MGP_129S1SvImJ_G0024132	Rab18	78	45.062
MGP_129S1SvImJ_G0019167	Rab5c	90	41.262	MGP_129S1SvImJ_G0034943	Rab11a	88	49.630
MGP_129S1SvImJ_G0019167	Rab5c	73	35.625	MGP_129S1SvImJ_G0017350	Rab36	60	35.625
MGP_129S1SvImJ_G0019167	Rab5c	83	30.000	MGP_129S1SvImJ_G0027689	Nras	99	33.333
MGP_129S1SvImJ_G0019167	Rab5c	94	41.379	MGP_129S1SvImJ_G0035193	Rab6b	98	41.379
MGP_129S1SvImJ_G0019167	Rab5c	71	35.948	MGP_129S1SvImJ_G0022241	Rabl2	67	35.948
MGP_129S1SvImJ_G0019167	Rab5c	89	35.859	MGP_129S1SvImJ_G0036106	Rab9b	97	35.859
MGP_129S1SvImJ_G0019167	Rab5c	89	36.318	MGP_129S1SvImJ_G0035694	Rab33a	85	36.318
MGP_129S1SvImJ_G0019167	Rab5c	55	31.967	MGP_129S1SvImJ_G0031102	Arl8b	62	31.967
MGP_129S1SvImJ_G0019167	Rab5c	75	36.585	MGP_129S1SvImJ_G0035862	Rab39b	77	36.585
MGP_129S1SvImJ_G0019167	Rab5c	89	43.590	MGP_129S1SvImJ_G0018064	Rab1a	95	43.590
MGP_129S1SvImJ_G0019167	Rab5c	90	47.423	MGP_129S1SvImJ_G0026959	Rab22a	98	47.423
MGP_129S1SvImJ_G0019167	Rab5c	78	42.012	MGP_129S1SvImJ_G0032514	Rab30	83	42.012
MGP_129S1SvImJ_G0019167	Rab5c	75	48.447	MGP_129S1SvImJ_G0023535	Rab11b	89	49.624
MGP_129S1SvImJ_G0019167	Rab5c	93	37.379	MGP_129S1SvImJ_G0027198	Rab33b	89	37.379
MGP_129S1SvImJ_G0019167	Rab5c	81	35.227	MGP_129S1SvImJ_G0015902	Rab23	74	35.227
MGP_129S1SvImJ_G0019167	Rab5c	81	44.000	MGP_129S1SvImJ_G0032574	Rab6a	84	44.000
MGP_129S1SvImJ_G0019167	Rab5c	100	87.500	MGP_129S1SvImJ_G0023887	Rab5a	100	87.500
MGP_129S1SvImJ_G0019167	Rab5c	81	31.250	MGP_129S1SvImJ_G0029356	Rheb	93	31.250
MGP_129S1SvImJ_G0019167	Rab5c	89	35.784	MGP_129S1SvImJ_G0019866	Rab15	95	35.784
MGP_129S1SvImJ_G0019167	Rab5c	90	38.974	MGP_129S1SvImJ_G0028039	Rab2a	92	38.974
MGP_129S1SvImJ_G0019167	Rab5c	78	32.544	MGP_129S1SvImJ_G0031479	Kras	98	30.102
MGP_129S1SvImJ_G0019167	Rab5c	86	38.806	MGP_129S1SvImJ_G0023988	Rab12	75	36.000
MGP_129S1SvImJ_G0019167	Rab5c	73	31.875	MGP_129S1SvImJ_G0018768	Rab34	62	31.875
MGP_129S1SvImJ_G0019167	Rab5c	91	46.939	MGP_129S1SvImJ_G0023979	Rab31	98	46.939
MGP_129S1SvImJ_G0019167	Rab5c	77	42.442	MGP_129S1SvImJ_G0031005	Rab7	90	47.727
MGP_129S1SvImJ_G0019167	Rab5c	86	39.785	MGP_129S1SvImJ_G0025650	Rab14	89	40.741
MGP_129S1SvImJ_G0019167	Rab5c	55	31.707	MGP_129S1SvImJ_G0016517	Arl8a	62	31.707
MGP_129S1SvImJ_G0019167	Rab5c	89	44.330	MGP_129S1SvImJ_G0024693	Rab1b	96	44.330
MGP_129S1SvImJ_G0019167	Rab5c	89	40.206	MGP_129S1SvImJ_G0021294	Rab2b	90	40.206