EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_129S1SvImJ_G0019470 (Gene tree)
Gene ID: -
Gene Symbol: Rbfox3
Alias: D11Bwg0517e|Fox-3|Hrnbp3|NeuN|Neuna60
Full Name: RNA binding protein%2C fox-1 homolog (C. elegans) 3
Gene Type: protein_coding
Species: Mus_musculus_129s1svimj
Status: putative
Strand: Minus strand
Length: 438527 bases
Position: chr11:122814789-123253315
Accession: 106368
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_129S1SvImJ_P0033898	Fox-1_C	PF12414.8	2.3e-45	1	1
MGP_129S1SvImJ_P0033901	Fox-1_C	PF12414.8	2.3e-45	1	1
MGP_129S1SvImJ_P0033902	Fox-1_C	PF12414.8	2.3e-45	1	1
MGP_129S1SvImJ_P0033900	Fox-1_C	PF12414.8	2.4e-41	1	1
MGP_129S1SvImJ_P0033899	Fox-1_C	PF12414.8	2.5e-41	1	1
MGP_129S1SvImJ_P0033897	Fox-1_C	PF12414.8	2.9e-41	1	1
MGP_129S1SvImJ_P0033903	Fox-1_C	PF12414.8	1.6e-21	1	1
MGP_129S1SvImJ_P0033904	RRM_1	PF00076.22	3.2e-19	1	1
MGP_129S1SvImJ_P0033898	RRM_1	PF00076.22	1.5e-18	1	1
MGP_129S1SvImJ_P0033901	RRM_1	PF00076.22	1.5e-18	1	1
MGP_129S1SvImJ_P0033902	RRM_1	PF00076.22	1.7e-18	1	1
MGP_129S1SvImJ_P0033897	RRM_1	PF00076.22	1.9e-18	1	1
MGP_129S1SvImJ_P0033899	RRM_1	PF00076.22	2.1e-18	1	1
MGP_129S1SvImJ_P0033903	RRM_1	PF00076.22	1.9e-14	1	1
MGP_129S1SvImJ_P0033900	RRM_1	PF00076.22	0.0003	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_129S1SvImJ_T0033903	-	710	-	MGP_129S1SvImJ_P0033903	145 (aa)	-	-
MGP_129S1SvImJ_T0033902	-	2150	-	MGP_129S1SvImJ_P0033902	327 (aa)	-	-
MGP_129S1SvImJ_T0033901	-	1542	-	MGP_129S1SvImJ_P0033901	313 (aa)	-	-
MGP_129S1SvImJ_T0033900	-	1553	-	MGP_129S1SvImJ_P0033900	329 (aa)	-	-
MGP_129S1SvImJ_T0033906	-	369	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0033905	-	301	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0033904	-	900	-	MGP_129S1SvImJ_P0033904	169 (aa)	-	-
MGP_129S1SvImJ_T0033897	-	3084	XM_006533722	MGP_129S1SvImJ_P0033897	360 (aa)	XP_006533785	Q8BIF2
MGP_129S1SvImJ_T0033899	-	3140	-	MGP_129S1SvImJ_P0033899	374 (aa)	-	-
MGP_129S1SvImJ_T0033898	-	2809	-	MGP_129S1SvImJ_P0033898	313 (aa)	-	-

Gene Model

Click here to download MGP_129S1SvImJ_G0019470's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_129S1SvImJ_G0019470's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_129S1SvImJ_G0019470	Rbfox3	100	71.930	MGP_129S1SvImJ_G0022490	Rbfox1	91	65.123
MGP_129S1SvImJ_G0019470	Rbfox3	53	31.868	MGP_129S1SvImJ_G0033083	Tial1	81	31.111
MGP_129S1SvImJ_G0019470	Rbfox3	72	31.429	MGP_129S1SvImJ_G0016035	Boll	50	43.939
MGP_129S1SvImJ_G0019470	Rbfox3	99	61.932	MGP_129S1SvImJ_G0022021	Rbfox2	91	61.972
MGP_129S1SvImJ_G0019470	Rbfox3	67	39.130	MGP_129S1SvImJ_G0028739	Pabpc4	57	36.709