EuRBPDB

Description

Ensembl ID: MGP_129S1SvImJ_G0020633 (Gene tree)
Gene ID: -
Gene Symbol: Hnrnpk
Alias: Hnrpk|Hnrpk {ECO:0000313|EMBL:AAH89328.1,GN ECO:0000313|MGI:MGI:99894}|KBBP|NOVA|hnRNPK
Full Name: heterogeneous nuclear ribonucleoprotein K
Gene Type: protein_coding
Species: Mus_musculus_129s1svimj
Status: putative
Strand: Minus strand
Length: 10111 bases
Position: chr13:58032607-58042717
Accession: 99894
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_129S1SvImJ_P0037283	KH_1	PF00013.29	3e-43	1	3
MGP_129S1SvImJ_P0037283	KH_1	PF00013.29	3e-43	2	3
MGP_129S1SvImJ_P0037283	KH_1	PF00013.29	3e-43	3	3
MGP_129S1SvImJ_P0037287	KH_1	PF00013.29	1.1e-23	1	2
MGP_129S1SvImJ_P0037287	KH_1	PF00013.29	1.1e-23	2	2
MGP_129S1SvImJ_P0037284	KH_1	PF00013.29	1.6e-23	1	2
MGP_129S1SvImJ_P0037284	KH_1	PF00013.29	1.6e-23	2	2
MGP_129S1SvImJ_P0037289	KH_1	PF00013.29	2.9e-23	1	2
MGP_129S1SvImJ_P0037289	KH_1	PF00013.29	2.9e-23	2	2
MGP_129S1SvImJ_P0037291	KH_1	PF00013.29	3.3e-09	1	1
MGP_129S1SvImJ_P0037293	KH_1	PF00013.29	6.6e-09	1	1
MGP_129S1SvImJ_P0037293	KH_2	PF07650.17	0.00011	1	1
MGP_129S1SvImJ_P0037284	ROKNT	PF08067.11	3e-27	1	1
MGP_129S1SvImJ_P0037293	ROKNT	PF08067.11	3.6e-27	1	1
MGP_129S1SvImJ_P0037287	ROKNT	PF08067.11	1.9e-26	1	1
MGP_129S1SvImJ_P0037283	ROKNT	PF08067.11	4e-26	1	1
MGP_129S1SvImJ_P0037289	ROKNT	PF08067.11	1.9e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_129S1SvImJ_T0037284	-	1004	-	MGP_129S1SvImJ_P0037284	299 (aa)	-	-
MGP_129S1SvImJ_T0037285	-	522	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0037286	-	737	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0037287	-	900	-	MGP_129S1SvImJ_P0037287	256 (aa)	-	-
MGP_129S1SvImJ_T0037293	-	1053	-	MGP_129S1SvImJ_P0037293	97 (aa)	-	-
MGP_129S1SvImJ_T0037292	-	775	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0037291	-	476	-	MGP_129S1SvImJ_P0037291	87 (aa)	-	-
MGP_129S1SvImJ_T0037283	-	1581	XM_006517103	MGP_129S1SvImJ_P0037283	464 (aa)	XP_006517166	P61979
MGP_129S1SvImJ_T0037290	-	833	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0037288	-	459	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0037289	-	676	-	MGP_129S1SvImJ_P0037289	178 (aa)	-	-
MGP_129S1SvImJ_T0037294	-	780	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_129S1SvImJ_G0020633	Hnrnpk	78	31.724	MGP_129S1SvImJ_G0022415	Pcbp2	84	44.444
MGP_129S1SvImJ_G0020633	Hnrnpk	57	37.681	MGP_129S1SvImJ_G0031749	-	54	37.681
MGP_129S1SvImJ_G0020633	Hnrnpk	57	37.681	MGP_129S1SvImJ_G0031748	-	51	37.681
MGP_129S1SvImJ_G0020633	Hnrnpk	91	96.591	MGP_129S1SvImJ_G0032452	-	98	88.837
MGP_129S1SvImJ_G0020633	Hnrnpk	56	39.062	MGP_129S1SvImJ_G0019714	Nova1	56	39.062
MGP_129S1SvImJ_G0020633	Hnrnpk	70	51.316	MGP_129S1SvImJ_G0017390	Pcbp3	79	41.667
MGP_129S1SvImJ_G0020633	Hnrnpk	78	32.414	MGP_129S1SvImJ_G0035232	Pcbp4	86	33.728
MGP_129S1SvImJ_G0020633	Hnrnpk	78	31.724	MGP_129S1SvImJ_G0030978	Pcbp1	85	42.857