EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_129S1SvImJ_G0021329 (Gene tree)
Gene ID: -
Gene Symbol: Pabpn1
Alias: PAB2|Pab2|Pabp2|Pabp3|mPABII|poly(A) binding protein II
Full Name: poly(A) binding protein%2C nuclear 1
Gene Type: protein_coding
Species: Mus_musculus_129s1svimj
Status: putative
Strand: Plus strand
Length: 6464 bases
Position: chr14:48874476-48880939
Accession: 1859158
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_129S1SvImJ_P0039459	RRM_1	PF00076.22	3.8e-15	1	1
MGP_129S1SvImJ_P0039464	RRM_1	PF00076.22	4.8e-15	1	1
MGP_129S1SvImJ_P0039463	RRM_1	PF00076.22	1.3e-14	1	1
MGP_129S1SvImJ_P0039460	RRM_1	PF00076.22	1.4e-14	1	1
MGP_129S1SvImJ_P0039461	RRM_1	PF00076.22	1.5e-14	1	1
MGP_129S1SvImJ_P0039465	RRM_1	PF00076.22	8.6e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_129S1SvImJ_T0039459	-	680	XM_006519272	MGP_129S1SvImJ_P0039459	164 (aa)	XP_006519335	Q8CCS6
MGP_129S1SvImJ_T0039462	-	826	-	MGP_129S1SvImJ_P0039462	73 (aa)	-	-
MGP_129S1SvImJ_T0039463	-	2528	-	MGP_129S1SvImJ_P0039463	292 (aa)	-	-
MGP_129S1SvImJ_T0039460	-	1030	-	MGP_129S1SvImJ_P0039460	302 (aa)	-	-
MGP_129S1SvImJ_T0039461	-	1777	-	MGP_129S1SvImJ_P0039461	319 (aa)	-	-
MGP_129S1SvImJ_T0039464	-	700	-	MGP_129S1SvImJ_P0039464	178 (aa)	-	-
MGP_129S1SvImJ_T0039465	-	939	-	MGP_129S1SvImJ_P0039465	42 (aa)	-	-

Gene Model

Click here to download MGP_129S1SvImJ_G0021329's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_129S1SvImJ_G0021329's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_129S1SvImJ_G0021329	Pabpn1	93	61.538	MGP_129S1SvImJ_G0034235	Pabpn1l	51	55.102
MGP_129S1SvImJ_G0021329	Pabpn1	100	100.000	MGP_129S1SvImJ_G0021328	Gm20521	57	100.000