EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_129S1SvImJ_G0021397 (Gene tree)
Gene ID: -
Gene Symbol: Pspc1
Alias: 5730470C09Rik|AI327109|AI449052|PSP1|Psp1
Full Name: paraspeckle protein 1
Gene Type: protein_coding
Species: Mus_musculus_129s1svimj
Status: putative
Strand: Minus strand
Length: 59053 bases
Position: chr14:50821765-50880817
Accession: 1913895
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_129S1SvImJ_P0039673	RRM_1	PF00076.22	3.5e-32	1	2
MGP_129S1SvImJ_P0039673	RRM_1	PF00076.22	3.5e-32	2	2
MGP_129S1SvImJ_P0039672	RRM_1	PF00076.22	4.9e-32	1	2
MGP_129S1SvImJ_P0039672	RRM_1	PF00076.22	4.9e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_129S1SvImJ_T0039673	-	2863	-	MGP_129S1SvImJ_P0039673	466 (aa)	-	-
MGP_129S1SvImJ_T0039672	-	2383	-	MGP_129S1SvImJ_P0039672	523 (aa)	-	Q8R326
MGP_129S1SvImJ_T0039675	-	601	-	MGP_129S1SvImJ_P0039675	58 (aa)	-	-
MGP_129S1SvImJ_T0039674	-	528	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_129S1SvImJ_G0021397's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_129S1SvImJ_G0021397's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_129S1SvImJ_G0021397	Pspc1	69	41.304	MGP_129S1SvImJ_G0017486	Cirbp	68	34.247
MGP_129S1SvImJ_G0021397	Pspc1	91	36.667	MGP_129S1SvImJ_G0024673	-	59	33.036
MGP_129S1SvImJ_G0021397	Pspc1	84	67.347	MGP_129S1SvImJ_G0035961	Nono	80	63.613
MGP_129S1SvImJ_G0021397	Pspc1	84	71.429	MGP_129S1SvImJ_G0028790	Sfpq	55	65.891