EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_129S1SvImJ_G0021796 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc1
Alias: PABP|Pabp1|PabpI|Pabpl1|ePAB
Full Name: poly(A) binding protein%2C cytoplasmic 1
Gene Type: protein_coding
Species: Mus_musculus_129s1svimj
Status: putative
Strand: Minus strand
Length: 16751 bases
Position: chr15:34984273-35001023
Accession: 1349722
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_129S1SvImJ_P0040805	PABP	PF00658.18	7.5e-32	1	1
MGP_129S1SvImJ_P0040805	RRM_5	PF13893.6	2.4e-08	1	2
MGP_129S1SvImJ_P0040805	RRM_5	PF13893.6	2.4e-08	2	2
MGP_129S1SvImJ_P0040805	RRM_1	PF00076.22	1.4e-90	1	4
MGP_129S1SvImJ_P0040805	RRM_1	PF00076.22	1.4e-90	2	4
MGP_129S1SvImJ_P0040805	RRM_1	PF00076.22	1.4e-90	3	4
MGP_129S1SvImJ_P0040805	RRM_1	PF00076.22	1.4e-90	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_129S1SvImJ_T0040808	-	866	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0040809	-	2423	-	MGP_129S1SvImJ_P0040809	636 (aa)	-	-
MGP_129S1SvImJ_T0040805	-	2700	XM_011245339	MGP_129S1SvImJ_P0040805	636 (aa)	XP_011243641	P29341
MGP_129S1SvImJ_T0040806	-	725	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0040807	-	632	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0040811	-	2768	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0040810	-	747	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_129S1SvImJ_G0021796's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_129S1SvImJ_G0021796's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_129S1SvImJ_G0021796	Pabpc1	57	32.450	MGP_129S1SvImJ_G0033333	Elavl1	95	32.450
MGP_129S1SvImJ_G0021796	Pabpc1	58	37.349	MGP_129S1SvImJ_G0028445	Elavl2	89	37.349
MGP_129S1SvImJ_G0021796	Pabpc1	51	34.884	MGP_129S1SvImJ_G0025332	Celf2	57	35.714
MGP_129S1SvImJ_G0021796	Pabpc1	56	34.783	MGP_129S1SvImJ_G0033083	Tial1	94	31.008
MGP_129S1SvImJ_G0021796	Pabpc1	98	61.635	MGP_129S1SvImJ_G0026834	Pabpc1l	99	61.478
MGP_129S1SvImJ_G0021796	Pabpc1	59	67.493	MGP_129S1SvImJ_G0027190	Pabpc4l	97	69.277
MGP_129S1SvImJ_G0021796	Pabpc1	57	39.344	MGP_129S1SvImJ_G0027606	Sf3b4	70	39.344
MGP_129S1SvImJ_G0021796	Pabpc1	58	34.667	MGP_129S1SvImJ_G0030000	Rbm19	62	34.667
MGP_129S1SvImJ_G0021796	Pabpc1	58	36.145	MGP_129S1SvImJ_G0028576	Elavl4	88	36.145
MGP_129S1SvImJ_G0021796	Pabpc1	57	38.095	MGP_129S1SvImJ_G0030975	Tia1	87	38.095
MGP_129S1SvImJ_G0021796	Pabpc1	58	36.145	MGP_129S1SvImJ_G0034474	Elavl3	92	36.145
MGP_129S1SvImJ_G0021796	Pabpc1	98	77.342	MGP_129S1SvImJ_G0028739	Pabpc4	100	94.928
MGP_129S1SvImJ_G0021796	Pabpc1	99	80.620	MGP_129S1SvImJ_G0023139	Pabpc6	99	80.620
MGP_129S1SvImJ_G0021796	Pabpc1	100	80.346	MGP_129S1SvImJ_G0024369	Pabpc2	100	80.346
MGP_129S1SvImJ_G0021796	Pabpc1	58	64.607	MGP_129S1SvImJ_G0036044	Pabpc5	95	64.463