EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_129S1SvImJ_G0023139 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc6
Alias: 4932702K14Rik|AI428050|Pabpc3
Full Name: poly(A) binding protein%2C cytoplasmic 6
Gene Type: protein_coding
Species: Mus_musculus_129s1svimj
Status: putative
Strand: Minus strand
Length: 3203 bases
Position: chr17:7214005-7217207
Accession: 1914793
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_129S1SvImJ_P0045522	PABP	PF00658.18	1.4e-26	1	1
MGP_129S1SvImJ_P0045522	RRM_5	PF13893.6	3.6e-07	1	1
MGP_129S1SvImJ_P0045522	RRM_1	PF00076.22	1.9e-89	1	4
MGP_129S1SvImJ_P0045522	RRM_1	PF00076.22	1.9e-89	2	4
MGP_129S1SvImJ_P0045522	RRM_1	PF00076.22	1.9e-89	3	4
MGP_129S1SvImJ_P0045522	RRM_1	PF00076.22	1.9e-89	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_129S1SvImJ_T0045522	-	3203	-	MGP_129S1SvImJ_P0045522	642 (aa)	-	Q9D4E6

Gene Model

Click here to download MGP_129S1SvImJ_G0023139's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_129S1SvImJ_G0023139's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_129S1SvImJ_G0023139	Pabpc6	62	36.842	MGP_129S1SvImJ_G0024209	Celf4	62	36.842
MGP_129S1SvImJ_G0023139	Pabpc6	62	36.145	MGP_129S1SvImJ_G0034474	Elavl3	92	36.145
MGP_129S1SvImJ_G0023139	Pabpc6	60	32.468	MGP_129S1SvImJ_G0028576	Elavl4	88	32.468
MGP_129S1SvImJ_G0023139	Pabpc6	60	37.349	MGP_129S1SvImJ_G0028445	Elavl2	90	37.349
MGP_129S1SvImJ_G0023139	Pabpc6	53	35.526	MGP_129S1SvImJ_G0026137	Celf1	52	35.526
MGP_129S1SvImJ_G0023139	Pabpc6	99	67.285	MGP_129S1SvImJ_G0028739	Pabpc4	100	86.232
MGP_129S1SvImJ_G0023139	Pabpc6	97	56.714	MGP_129S1SvImJ_G0026834	Pabpc1l	99	56.667
MGP_129S1SvImJ_G0023139	Pabpc6	58	36.905	MGP_129S1SvImJ_G0030975	Tia1	96	36.905
MGP_129S1SvImJ_G0023139	Pabpc6	57	34.667	MGP_129S1SvImJ_G0030000	Rbm19	70	34.667
MGP_129S1SvImJ_G0023139	Pabpc6	58	64.497	MGP_129S1SvImJ_G0027190	Pabpc4l	98	64.497
MGP_129S1SvImJ_G0023139	Pabpc6	64	39.062	MGP_129S1SvImJ_G0034902	Celf6	73	39.062
MGP_129S1SvImJ_G0023139	Pabpc6	56	34.014	MGP_129S1SvImJ_G0033083	Tial1	94	31.783
MGP_129S1SvImJ_G0023139	Pabpc6	51	34.211	MGP_129S1SvImJ_G0025332	Celf2	57	34.211
MGP_129S1SvImJ_G0023139	Pabpc6	71	36.585	MGP_129S1SvImJ_G0027553	Celf3	80	37.500
MGP_129S1SvImJ_G0023139	Pabpc6	99	70.295	MGP_129S1SvImJ_G0024369	Pabpc2	99	70.295
MGP_129S1SvImJ_G0023139	Pabpc6	58	38.798	MGP_129S1SvImJ_G0027606	Sf3b4	50	38.798
MGP_129S1SvImJ_G0023139	Pabpc6	60	34.091	MGP_129S1SvImJ_G0035401	Rbms3	77	33.708
MGP_129S1SvImJ_G0023139	Pabpc6	99	80.620	MGP_129S1SvImJ_G0021796	Pabpc1	99	80.620
MGP_129S1SvImJ_G0023139	Pabpc6	59	58.470	MGP_129S1SvImJ_G0036044	Pabpc5	95	58.445