EuRBPDB

Description

Ensembl ID: MGP_129S1SvImJ_G0023633 (Gene tree)
Gene ID: -
Gene Symbol: Ddx39b
Alias: 0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh|Uap56
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
Gene Type: protein_coding
Species: Mus_musculus_129s1svimj
Status: putative
Strand: Plus strand
Length: 13546 bases
Position: chr17:35393214-35406759
Accession: 99240
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_129S1SvImJ_P0047400	ResIII	PF04851.15	1.5e-07	1	1
MGP_129S1SvImJ_P0047399	ResIII	PF04851.15	2.3e-07	1	1
MGP_129S1SvImJ_P0047402	ResIII	PF04851.15	2.3e-07	1	1
MGP_129S1SvImJ_P0047404	ResIII	PF04851.15	2.3e-07	1	1
MGP_129S1SvImJ_P0047400	DEAD	PF00270.29	8.1e-39	1	1
MGP_129S1SvImJ_P0047399	DEAD	PF00270.29	1.2e-38	1	1
MGP_129S1SvImJ_P0047402	DEAD	PF00270.29	1.2e-38	1	1
MGP_129S1SvImJ_P0047404	DEAD	PF00270.29	1.2e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_129S1SvImJ_T0047401	-	1711	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0047399	-	1739	-	MGP_129S1SvImJ_P0047399	428 (aa)	-	Q9Z1N5
MGP_129S1SvImJ_T0047400	-	1207	-	MGP_129S1SvImJ_P0047400	324 (aa)	-	-
MGP_129S1SvImJ_T0047403	-	740	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0047402	-	2848	-	MGP_129S1SvImJ_P0047402	428 (aa)	-	-
MGP_129S1SvImJ_T0047404	-	1770	-	MGP_129S1SvImJ_P0047404	428 (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_129S1SvImJ_G0023633	Ddx39b	81	35.447	MGP_129S1SvImJ_G0031412	Ddx47	84	33.141
MGP_129S1SvImJ_G0023633	Ddx39b	90	35.659	MGP_129S1SvImJ_G0034714	Ddx6	79	35.659
MGP_129S1SvImJ_G0023633	Ddx39b	84	31.903	MGP_129S1SvImJ_G0034536	Ddx25	82	32.020
MGP_129S1SvImJ_G0023633	Ddx39b	58	35.246	MGP_129S1SvImJ_G0034133	Ddx19b	74	35.246
MGP_129S1SvImJ_G0023633	Ddx39b	82	36.080	MGP_129S1SvImJ_G0018546	Eif4a1	91	36.080
MGP_129S1SvImJ_G0023633	Ddx39b	86	38.919	MGP_129S1SvImJ_G0022678	Eif4a2	90	38.919
MGP_129S1SvImJ_G0023633	Ddx39b	63	30.804	MGP_129S1SvImJ_G0035571	Ddx3x	56	30.105
MGP_129S1SvImJ_G0023633	Ddx39b	85	38.356	MGP_129S1SvImJ_G0019478	Eif4a3	88	38.356
MGP_129S1SvImJ_G0023633	Ddx39b	77	30.029	MGP_129S1SvImJ_G0019313	Ddx5	65	30.029
MGP_129S1SvImJ_G0023633	Ddx39b	84	32.970	MGP_129S1SvImJ_G0026906	Ddx27	54	32.134
MGP_129S1SvImJ_G0023633	Ddx39b	63	30.804	MGP_129S1SvImJ_G0016921	D1Pas1	57	30.105
MGP_129S1SvImJ_G0023633	Ddx39b	100	90.888	MGP_129S1SvImJ_G0033839	Ddx39	100	90.888
MGP_129S1SvImJ_G0023633	Ddx39b	67	30.962	MGP_129S1SvImJ_G0034132	Ddx19a	77	31.338
MGP_129S1SvImJ_G0023633	Ddx39b	86	32.891	MGP_129S1SvImJ_G0033699	Ddx49	97	33.046