EuRBPDB

Description

Ensembl ID: MGP_129S1SvImJ_G0023929 (Gene tree)
Gene ID: -
Gene Symbol: Safb
Alias: 3110021E02Rik|5330423C17Rik|AU018122|D18386|E130307D12|HAP|HET|SAF-B1|SAFB1|Safb1
Full Name: scaffold attachment factor B
Gene Type: protein_coding
Species: Mus_musculus_129s1svimj
Status: putative
Strand: Plus strand
Length: 21347 bases
Position: chr17:58288078-58309424
Accession: 2146974
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_129S1SvImJ_P0048297	RRM_5	PF13893.6	5.8e-06	1	1
MGP_129S1SvImJ_P0048295	RRM_5	PF13893.6	5.9e-06	1	1
MGP_129S1SvImJ_P0048297	RRM_1	PF00076.22	2.3e-12	1	1
MGP_129S1SvImJ_P0048295	RRM_1	PF00076.22	2.3e-12	1	1
MGP_129S1SvImJ_P0048297	SAP	PF02037.27	1.6e-10	1	1
MGP_129S1SvImJ_P0048295	SAP	PF02037.27	1.6e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_129S1SvImJ_T0048305	-	428	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0048304	-	1066	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0048303	-	408	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0048302	-	703	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0048301	-	714	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0048300	-	3582	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0048299	-	2020	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0048298	-	774	-	MGP_129S1SvImJ_P0048298	168 (aa)	-	-
MGP_129S1SvImJ_T0048295	-	3071	-	MGP_129S1SvImJ_P0048295	922 (aa)	-	-
MGP_129S1SvImJ_T0048294	-	1777	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0048297	-	3060	-	MGP_129S1SvImJ_P0048297	920 (aa)	-	-
MGP_129S1SvImJ_T0048296	-	342	-	MGP_129S1SvImJ_P0048296	44 (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_129S1SvImJ_G0023929	Safb	100	60.240	MGP_129S1SvImJ_G0023928	Safb2	89	50.625