EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_129S1SvImJ_G0024369 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc2
Alias: Pabp|Pabp+|Pabp2
Full Name: poly(A) binding protein%2C cytoplasmic 2
Gene Type: protein_coding
Species: Mus_musculus_129s1svimj
Status: putative
Strand: Plus strand
Length: 2586 bases
Position: chr18:38325017-38327602
Accession: 1349723
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_129S1SvImJ_P0049557	PABP	PF00658.18	1.8e-21	1	1
MGP_129S1SvImJ_P0049557	RRM_5	PF13893.6	8.5e-10	1	2
MGP_129S1SvImJ_P0049557	RRM_5	PF13893.6	8.5e-10	2	2
MGP_129S1SvImJ_P0049557	RRM_1	PF00076.22	2.1e-86	1	4
MGP_129S1SvImJ_P0049557	RRM_1	PF00076.22	2.1e-86	2	4
MGP_129S1SvImJ_P0049557	RRM_1	PF00076.22	2.1e-86	3	4
MGP_129S1SvImJ_P0049557	RRM_1	PF00076.22	2.1e-86	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_129S1SvImJ_T0049557	-	2586	-	MGP_129S1SvImJ_P0049557	628 (aa)	-	Q62029

Gene Model

Click here to download MGP_129S1SvImJ_G0024369's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_129S1SvImJ_G0024369's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_129S1SvImJ_G0024369	Pabpc2	57	35.443	MGP_129S1SvImJ_G0030975	Tia1	95	33.835
MGP_129S1SvImJ_G0024369	Pabpc2	99	70.295	MGP_129S1SvImJ_G0023139	Pabpc6	99	70.295
MGP_129S1SvImJ_G0024369	Pabpc2	98	56.938	MGP_129S1SvImJ_G0026834	Pabpc1l	99	56.938
MGP_129S1SvImJ_G0024369	Pabpc2	59	34.667	MGP_129S1SvImJ_G0030000	Rbm19	70	34.667
MGP_129S1SvImJ_G0024369	Pabpc2	61	64.167	MGP_129S1SvImJ_G0027190	Pabpc4l	95	68.098
MGP_129S1SvImJ_G0024369	Pabpc2	50	35.036	MGP_129S1SvImJ_G0033083	Tial1	92	32.500
MGP_129S1SvImJ_G0024369	Pabpc2	59	36.145	MGP_129S1SvImJ_G0028445	Elavl2	89	36.145
MGP_129S1SvImJ_G0024369	Pabpc2	61	34.940	MGP_129S1SvImJ_G0034474	Elavl3	90	34.940
MGP_129S1SvImJ_G0024369	Pabpc2	58	38.068	MGP_129S1SvImJ_G0027606	Sf3b4	67	38.068
MGP_129S1SvImJ_G0024369	Pabpc2	59	34.940	MGP_129S1SvImJ_G0028576	Elavl4	88	34.940
MGP_129S1SvImJ_G0024369	Pabpc2	100	80.346	MGP_129S1SvImJ_G0021796	Pabpc1	100	80.346
MGP_129S1SvImJ_G0024369	Pabpc2	62	60.955	MGP_129S1SvImJ_G0036044	Pabpc5	96	61.111
MGP_129S1SvImJ_G0024369	Pabpc2	98	66.610	MGP_129S1SvImJ_G0028739	Pabpc4	100	87.681