EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_129S1SvImJ_G0025807 (Gene tree)
Gene ID: -
Gene Symbol: Ssb
Alias: La protein|SS-B|Ss-b|autoantigen La
Full Name: Sjogren syndrome antigen B
Gene Type: protein_coding
Species: Mus_musculus_129s1svimj
Status: putative
Strand: Plus strand
Length: 10280 bases
Position: chr2:69858271-69868550
Accession: 98423
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_129S1SvImJ_P0055165	RRM_1	PF00076.22	4.1e-12	1	1
MGP_129S1SvImJ_P0055166	RRM_1	PF00076.22	4.1e-12	1	1
MGP_129S1SvImJ_P0055168	RRM_1	PF00076.22	7.1e-10	1	1
MGP_129S1SvImJ_P0055170	RRM_3	PF08777.11	2.8e-28	1	1
MGP_129S1SvImJ_P0055165	RRM_3	PF08777.11	7.2e-28	1	1
MGP_129S1SvImJ_P0055166	RRM_3	PF08777.11	7.2e-28	1	1
MGP_129S1SvImJ_P0055168	La	PF05383.17	2.7e-22	1	1
MGP_129S1SvImJ_P0055165	La	PF05383.17	7.7e-22	1	1
MGP_129S1SvImJ_P0055166	La	PF05383.17	7.7e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_129S1SvImJ_T0055169	-	666	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0055168	-	634	-	MGP_129S1SvImJ_P0055168	184 (aa)	-	-
MGP_129S1SvImJ_T0055165	-	2001	XM_006499069	MGP_129S1SvImJ_P0055165	415 (aa)	XP_006499132	P32067
MGP_129S1SvImJ_T0055170	-	991	-	MGP_129S1SvImJ_P0055170	229 (aa)	-	-
MGP_129S1SvImJ_T0055166	-	2088	-	MGP_129S1SvImJ_P0055166	415 (aa)	-	-
MGP_129S1SvImJ_T0055167	-	1563	-	MGP_129S1SvImJ_P0055167	159 (aa)	-	-

Gene Model

Click here to download MGP_129S1SvImJ_G0025807's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_129S1SvImJ_G0025807's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_129S1SvImJ_G0025807	Ssb	84	34.328	MGP_129S1SvImJ_G0027860	Larp7	63	47.059