EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_129S1SvImJ_G0026452 (Gene tree)
Gene ID: -
Gene Symbol: Snrnp200
Alias: A330064G03Rik|Ascc3l1|BC011390|HELIC2|Kiaa0788|U5-200-KD|U5-200KD
Full Name: small nuclear ribonucleoprotein 200 (U5)
Gene Type: protein_coding
Species: Mus_musculus_129s1svimj
Status: putative
Strand: Plus strand
Length: 37376 bases
Position: chr2:130480315-130517690
Accession: 2444401
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_129S1SvImJ_P0057469	ResIII	PF04851.15	3.1e-25	1	2
MGP_129S1SvImJ_P0057469	ResIII	PF04851.15	3.1e-25	2	2
MGP_129S1SvImJ_P0057469	DEAD	PF00270.29	4.1e-52	1	2
MGP_129S1SvImJ_P0057469	DEAD	PF00270.29	4.1e-52	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_129S1SvImJ_T0057471	-	722	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0057470	-	593	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0057472	-	741	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0057468	-	2923	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0057469	-	6745	-	MGP_129S1SvImJ_P0057469	2136 (aa)	-	-

Gene Model

Click here to download MGP_129S1SvImJ_G0026452's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_129S1SvImJ_G0026452's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_129S1SvImJ_G0026452	Snrnp200	76	32.173	MGP_129S1SvImJ_G0029832	Hfm1	59	32.442
MGP_129S1SvImJ_G0026452	Snrnp200	86	42.051	MGP_129S1SvImJ_G0017212	Ascc3	81	44.301