EuRBPDB

Description

Ensembl ID: MGP_129S1SvImJ_G0026760 (Gene tree)
Gene ID: -
Gene Symbol: Rbm39
Alias: 1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|Caper|Caper alpha|R75070|Rnpc2|caper
Full Name: RNA binding motif protein 39
Gene Type: protein_coding
Species: Mus_musculus_129s1svimj
Status: putative
Strand: Minus strand
Length: 43490 bases
Position: chr2:161009312-161052801
Accession: 2157953
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_129S1SvImJ_P0058720	RRM_1	PF00076.22	4.3e-41	1	2
MGP_129S1SvImJ_P0058720	RRM_1	PF00076.22	4.3e-41	2	2
MGP_129S1SvImJ_P0058722	RRM_1	PF00076.22	6e-41	1	2
MGP_129S1SvImJ_P0058722	RRM_1	PF00076.22	6e-41	2	2
MGP_129S1SvImJ_P0058723	RRM_1	PF00076.22	6e-41	1	2
MGP_129S1SvImJ_P0058723	RRM_1	PF00076.22	6e-41	2	2
MGP_129S1SvImJ_P0058727	RRM_1	PF00076.22	2.2e-22	1	1
MGP_129S1SvImJ_P0058728	RRM_1	PF00076.22	9.4e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_129S1SvImJ_T0058728	-	1090	-	MGP_129S1SvImJ_P0058728	273 (aa)	-	-
MGP_129S1SvImJ_T0058729	-	695	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0058720	-	2900	XM_006498832	MGP_129S1SvImJ_P0058720	499 (aa)	XP_006498895	Q8VH51
MGP_129S1SvImJ_T0058721	-	2393	-	MGP_129S1SvImJ_P0058721	514 (aa)	-	-
MGP_129S1SvImJ_T0058722	-	2673	-	MGP_129S1SvImJ_P0058722	493 (aa)	-	-
MGP_129S1SvImJ_T0058723	-	2804	-	MGP_129S1SvImJ_P0058723	493 (aa)	-	-
MGP_129S1SvImJ_T0058724	-	2622	-	MGP_129S1SvImJ_P0058724	415 (aa)	-	-
MGP_129S1SvImJ_T0058725	-	2005	-	MGP_129S1SvImJ_P0058725	47 (aa)	-	-
MGP_129S1SvImJ_T0058740	-	743	-	MGP_129S1SvImJ_P0058740	40 (aa)	-	-
MGP_129S1SvImJ_T0058727	-	931	-	MGP_129S1SvImJ_P0058727	310 (aa)	-	-
MGP_129S1SvImJ_T0058745	-	715	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0058744	-	1008	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0058739	-	585	-	MGP_129S1SvImJ_P0058739	62 (aa)	-	-
MGP_129S1SvImJ_T0058738	-	710	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0058733	-	497	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0058732	-	754	-	MGP_129S1SvImJ_P0058732	156 (aa)	-	-
MGP_129S1SvImJ_T0058731	-	1453	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0058730	-	546	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0058737	-	593	-	MGP_129S1SvImJ_P0058737	39 (aa)	-	-
MGP_129S1SvImJ_T0058736	-	707	-	MGP_129S1SvImJ_P0058736	40 (aa)	-	-
MGP_129S1SvImJ_T0058735	-	685	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0058734	-	714	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0058742	-	672	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0058726	-	1998	-	MGP_129S1SvImJ_P0058726	40 (aa)	-	-
MGP_129S1SvImJ_T0058741	-	667	-	MGP_129S1SvImJ_P0058741	38 (aa)	-	-
MGP_129S1SvImJ_T0058743	-	699	-	MGP_129S1SvImJ_P0058743	40 (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_129S1SvImJ_G0026760	Rbm39	71	40.000	MGP_129S1SvImJ_G0028445	Elavl2	92	40.541
MGP_129S1SvImJ_G0026760	Rbm39	52	34.483	MGP_129S1SvImJ_G0017492	Dazap1	94	34.483