EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_129S1SvImJ_G0026834 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc1l
Alias: 1810053B01Rik|Epab|ePAB
Full Name: poly(A) binding protein%2C cytoplasmic 1-like
Gene Type: protein_coding
Species: Mus_musculus_129s1svimj
Status: putative
Strand: Plus strand
Length: 34128 bases
Position: chr2:169395530-169429657
Accession: 1922908
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_129S1SvImJ_P0059091	PABP	PF00658.18	1.8e-23	1	1
MGP_129S1SvImJ_P0059091	RRM_5	PF13893.6	3.2e-17	1	3
MGP_129S1SvImJ_P0059091	RRM_5	PF13893.6	3.2e-17	2	3
MGP_129S1SvImJ_P0059091	RRM_5	PF13893.6	3.2e-17	3	3
MGP_129S1SvImJ_P0059091	RRM_1	PF00076.22	3.5e-90	1	4
MGP_129S1SvImJ_P0059091	RRM_1	PF00076.22	3.5e-90	2	4
MGP_129S1SvImJ_P0059091	RRM_1	PF00076.22	3.5e-90	3	4
MGP_129S1SvImJ_P0059091	RRM_1	PF00076.22	3.5e-90	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_129S1SvImJ_T0059095	-	329	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0059094	-	751	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0059091	-	2355	XM_006499825	MGP_129S1SvImJ_P0059091	607 (aa)	XP_006499888	A2A5N3
MGP_129S1SvImJ_T0059093	-	438	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0059092	-	617	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_129S1SvImJ_G0026834's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_129S1SvImJ_G0026834's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_129S1SvImJ_G0026834	Pabpc1l	64	57.022	MGP_129S1SvImJ_G0036044	Pabpc5	96	56.944
MGP_129S1SvImJ_G0026834	Pabpc1l	57	34.118	MGP_129S1SvImJ_G0027553	Celf3	67	32.857
MGP_129S1SvImJ_G0026834	Pabpc1l	63	38.889	MGP_129S1SvImJ_G0034474	Elavl3	59	30.488
MGP_129S1SvImJ_G0026834	Pabpc1l	98	61.160	MGP_129S1SvImJ_G0028739	Pabpc4	100	79.710
MGP_129S1SvImJ_G0026834	Pabpc1l	53	39.759	MGP_129S1SvImJ_G0017486	Cirbp	91	39.759
MGP_129S1SvImJ_G0026834	Pabpc1l	56	30.864	MGP_129S1SvImJ_G0020627	Hnrnpa0	50	31.613
MGP_129S1SvImJ_G0026834	Pabpc1l	60	35.484	MGP_129S1SvImJ_G0030000	Rbm19	72	36.066
MGP_129S1SvImJ_G0026834	Pabpc1l	62	33.735	MGP_129S1SvImJ_G0028576	Elavl4	89	33.735
MGP_129S1SvImJ_G0026834	Pabpc1l	99	56.667	MGP_129S1SvImJ_G0023139	Pabpc6	97	56.714
MGP_129S1SvImJ_G0026834	Pabpc1l	59	60.736	MGP_129S1SvImJ_G0027190	Pabpc4l	95	60.736
MGP_129S1SvImJ_G0026834	Pabpc1l	99	56.938	MGP_129S1SvImJ_G0024369	Pabpc2	98	56.938
MGP_129S1SvImJ_G0026834	Pabpc1l	64	34.940	MGP_129S1SvImJ_G0028445	Elavl2	92	34.940
MGP_129S1SvImJ_G0026834	Pabpc1l	59	38.095	MGP_129S1SvImJ_G0030975	Tia1	87	38.095
MGP_129S1SvImJ_G0026834	Pabpc1l	53	34.884	MGP_129S1SvImJ_G0025332	Celf2	57	34.884
MGP_129S1SvImJ_G0026834	Pabpc1l	59	30.818	MGP_129S1SvImJ_G0035401	Rbms3	77	30.818
MGP_129S1SvImJ_G0026834	Pabpc1l	99	61.478	MGP_129S1SvImJ_G0021796	Pabpc1	98	61.635