EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_129S1SvImJ_G0026929 (Gene tree)
Gene ID: -
Gene Symbol: Sall4
Alias: 5730441M18Rik|AA407717|AL022809|AW536104|C330011P20Rik|C78083|C78563|Tex20
Full Name: sal-like 4 (Drosophila)
Gene Type: protein_coding
Species: Mus_musculus_129s1svimj
Status: putative
Strand: Minus strand
Length: 23681 bases
Position: chr2:174635563-174659243
Accession: 2139360
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_129S1SvImJ_P0059484	zf-C2H2	PF00096.26	1.4e-29	1	6
MGP_129S1SvImJ_P0059484	zf-C2H2	PF00096.26	1.4e-29	2	6
MGP_129S1SvImJ_P0059484	zf-C2H2	PF00096.26	1.4e-29	3	6
MGP_129S1SvImJ_P0059484	zf-C2H2	PF00096.26	1.4e-29	4	6
MGP_129S1SvImJ_P0059484	zf-C2H2	PF00096.26	1.4e-29	5	6
MGP_129S1SvImJ_P0059484	zf-C2H2	PF00096.26	1.4e-29	6	6
MGP_129S1SvImJ_P0059486	zf-C2H2	PF00096.26	2e-13	1	2
MGP_129S1SvImJ_P0059486	zf-C2H2	PF00096.26	2e-13	2	2
MGP_129S1SvImJ_P0059485	zf-C2H2	PF00096.26	3.2e-11	1	2
MGP_129S1SvImJ_P0059485	zf-C2H2	PF00096.26	3.2e-11	2	2
MGP_129S1SvImJ_P0059483	zf-C2H2	PF00096.26	3.3e-08	1	2
MGP_129S1SvImJ_P0059483	zf-C2H2	PF00096.26	3.3e-08	2	2
MGP_129S1SvImJ_P0059484	zf-met	PF12874.7	2.3e-11	1	1
MGP_129S1SvImJ_P0059486	zf-met	PF12874.7	1.4e-09	1	2
MGP_129S1SvImJ_P0059486	zf-met	PF12874.7	1.4e-09	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_129S1SvImJ_T0059488	-	423	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0059489	-	328	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0059486	-	393	-	MGP_129S1SvImJ_P0059486	131 (aa)	-	-
MGP_129S1SvImJ_T0059487	-	773	-	MGP_129S1SvImJ_P0059487	215 (aa)	-	-
MGP_129S1SvImJ_T0059484	-	5068	-	MGP_129S1SvImJ_P0059484	1067 (aa)	-	-
MGP_129S1SvImJ_T0059485	-	2529	-	MGP_129S1SvImJ_P0059485	278 (aa)	-	-
MGP_129S1SvImJ_T0059483	-	3736	XM_006500486	MGP_129S1SvImJ_P0059483	623 (aa)	XP_006500549	Q8BX22

Gene Model

Click here to download MGP_129S1SvImJ_G0026929's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_129S1SvImJ_G0026929's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_129S1SvImJ_G0026929	Sall4	98	84.507	MGP_129S1SvImJ_G0024599	Sall3	66	65.385
MGP_129S1SvImJ_G0026929	Sall4	73	53.333	MGP_129S1SvImJ_G0024602	Zfp236	81	53.333
MGP_129S1SvImJ_G0026929	Sall4	100	64.706	MGP_129S1SvImJ_G0033924	Sall1	95	64.706