EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_129S1SvImJ_G0027606 (Gene tree)
Gene ID: -
Gene Symbol: Sf3b4
Alias: 49kDa|SF3b49|SF3b50|Sap49
Full Name: splicing factor 3b%2C subunit 4
Gene Type: protein_coding
Species: Mus_musculus_129s1svimj
Status: putative
Strand: Plus strand
Length: 5495 bases
Position: chr3:96984069-96989563
Accession: 109580
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_129S1SvImJ_P0062547	RRM_1	PF00076.22	5.5e-39	1	2
MGP_129S1SvImJ_P0062547	RRM_1	PF00076.22	5.5e-39	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_129S1SvImJ_T0062547	-	1918	-	MGP_129S1SvImJ_P0062547	424 (aa)	-	Q8QZY9
MGP_129S1SvImJ_T0062548	-	437	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_129S1SvImJ_G0027606's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_129S1SvImJ_G0027606's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_129S1SvImJ_G0027606	Sf3b4	50	38.798	MGP_129S1SvImJ_G0023139	Pabpc6	58	38.798
MGP_129S1SvImJ_G0027606	Sf3b4	53	30.043	MGP_129S1SvImJ_G0017560	Celf5	88	34.524
MGP_129S1SvImJ_G0027606	Sf3b4	54	38.636	MGP_129S1SvImJ_G0027190	Pabpc4l	96	38.636
MGP_129S1SvImJ_G0027606	Sf3b4	70	39.344	MGP_129S1SvImJ_G0021796	Pabpc1	57	39.344
MGP_129S1SvImJ_G0027606	Sf3b4	67	38.068	MGP_129S1SvImJ_G0024369	Pabpc2	58	38.068