EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_129S1SvImJ_G0027624 (Gene tree)
Gene ID: -
Gene Symbol: Rbm8a
Alias: 2310057C03Rik|AA673428|Rbm8
Full Name: RNA binding motif protein 8a
Gene Type: protein_coding
Species: Mus_musculus_129s1svimj
Status: putative
Strand: Plus strand
Length: 4102 bases
Position: chr3:97515130-97519231
Accession: 1913129
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_129S1SvImJ_P0062581	RRM_1	PF00076.22	5.2e-18	1	1
MGP_129S1SvImJ_P0062580	RRM_1	PF00076.22	5.6e-18	1	1
MGP_129S1SvImJ_P0062582	RRM_1	PF00076.22	5.6e-18	1	1
MGP_129S1SvImJ_P0062580	RRM_3	PF08777.11	3.7e-06	1	1
MGP_129S1SvImJ_P0062582	RRM_3	PF08777.11	3.8e-06	1	1
MGP_129S1SvImJ_P0062581	RRM_3	PF08777.11	8.5e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_129S1SvImJ_T0062581	-	2999	-	MGP_129S1SvImJ_P0062581	171 (aa)	-	-
MGP_129S1SvImJ_T0062580	-	2850	-	MGP_129S1SvImJ_P0062580	173 (aa)	-	Q9CWZ3
MGP_129S1SvImJ_T0062583	-	464	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0062582	-	525	-	MGP_129S1SvImJ_P0062582	174 (aa)	-	-
MGP_129S1SvImJ_T0062584	-	560	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_129S1SvImJ_G0027624's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_129S1SvImJ_G0027624's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_129S1SvImJ_G0027624	Rbm8a	54	35.870	MGP_129S1SvImJ_G0030975	Tia1	77	35.870
MGP_129S1SvImJ_G0027624	Rbm8a	57	31.313	MGP_129S1SvImJ_G0035748	Rbmx	73	32.000
MGP_129S1SvImJ_G0027624	Rbm8a	58	32.353	MGP_129S1SvImJ_G0028445	Elavl2	59	33.784
MGP_129S1SvImJ_G0027624	Rbm8a	62	30.693	MGP_129S1SvImJ_G0028576	Elavl4	54	33.784
MGP_129S1SvImJ_G0027624	Rbm8a	57	31.579	MGP_129S1SvImJ_G0033806	-	68	32.609
MGP_129S1SvImJ_G0027624	Rbm8a	62	32.000	MGP_129S1SvImJ_G0033333	Elavl1	74	32.000