EuRBPDB

Description

Ensembl ID: MGP_129S1SvImJ_G0028040 (Gene tree)
Gene ID: -
Gene Symbol: Chd7
Alias: A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis
Full Name: chromodomain helicase DNA binding protein 7
Gene Type: protein_coding
Species: Mus_musculus_129s1svimj
Status: putative
Strand: Plus strand
Length: 183238 bases
Position: chr4:5274100-5457337
Accession: 2444748
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_129S1SvImJ_P0064634	ResIII	PF04851.15	4.5e-06	1	1
MGP_129S1SvImJ_P0064635	ResIII	PF04851.15	4.5e-06	1	1
MGP_129S1SvImJ_P0064634	BRK	PF07533.16	4.7e-37	1	2
MGP_129S1SvImJ_P0064634	BRK	PF07533.16	4.7e-37	2	2
MGP_129S1SvImJ_P0064635	BRK	PF07533.16	4.7e-37	1	2
MGP_129S1SvImJ_P0064635	BRK	PF07533.16	4.7e-37	2	2
MGP_129S1SvImJ_P0064637	BRK	PF07533.16	1.2e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_129S1SvImJ_T0064639	-	741	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0064638	-	8958	-	MGP_129S1SvImJ_P0064638	2985 (aa)	-	-
MGP_129S1SvImJ_T0064633	-	2381	-	MGP_129S1SvImJ_P0064633	631 (aa)	-	-
MGP_129S1SvImJ_T0064632	-	4953	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0064635	-	10216	-	MGP_129S1SvImJ_P0064635	2986 (aa)	-	-
MGP_129S1SvImJ_T0064634	-	9445	-	MGP_129S1SvImJ_P0064634	2986 (aa)	-	-
MGP_129S1SvImJ_T0064637	-	3463	-	MGP_129S1SvImJ_P0064637	941 (aa)	-	-
MGP_129S1SvImJ_T0064636	-	458	-	MGP_129S1SvImJ_P0064636	19 (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_129S1SvImJ_G0028040	Chd7	94	54.334	MGP_129S1SvImJ_G0033927	Chd9	83	69.649
MGP_129S1SvImJ_G0028040	Chd7	67	62.375	MGP_129S1SvImJ_G0021293	Chd8	79	65.125
MGP_129S1SvImJ_G0028040	Chd7	72	64.905	MGP_129S1SvImJ_G0026810	Chd6	84	72.837