EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_129S1SvImJ_G0028141 (Gene tree)
Gene ID: -
Gene Symbol: Ddx58
Alias: 6430573D20Rik|C330021E21|RIG-I|RLR-1
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 58
Gene Type: protein_coding
Species: Mus_musculus_129s1svimj
Status: putative
Strand: Minus strand
Length: 47363 bases
Position: chr4:38046588-38093950
Accession: 2442858
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_129S1SvImJ_P0065050	ResIII	PF04851.15	3.2e-17	1	1
MGP_129S1SvImJ_P0065048	ResIII	PF04851.15	5.4e-17	1	1
MGP_129S1SvImJ_P0065048	RIG-I_C-RD	PF11648.8	4.9e-35	1	1
MGP_129S1SvImJ_P0065050	DEAD	PF00270.29	1.3e-16	1	1
MGP_129S1SvImJ_P0065048	DEAD	PF00270.29	2.8e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_129S1SvImJ_T0065047	-	3533	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0065046	-	386	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0065049	-	756	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0065048	-	3874	-	MGP_129S1SvImJ_P0065048	926 (aa)	-	-
MGP_129S1SvImJ_T0065054	-	1607	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0065052	-	1250	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0065053	-	541	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0065050	-	2127	-	MGP_129S1SvImJ_P0065050	707 (aa)	-	-
MGP_129S1SvImJ_T0065051	-	1641	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_129S1SvImJ_G0028141's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_129S1SvImJ_G0028141's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_129S1SvImJ_G0028141	Ddx58	98	30.691	MGP_129S1SvImJ_G0025772	Ifih1	97	30.691
MGP_129S1SvImJ_G0028141	Ddx58	72	35.010	MGP_129S1SvImJ_G0019164	Dhx58	97	32.468