EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_129S1SvImJ_G0028336 (Gene tree)
Gene ID: -
Gene Symbol: Ptbp3
Alias: 5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1
Full Name: polypyrimidine tract binding protein 3
Gene Type: protein_coding
Species: Mus_musculus_129s1svimj
Status: putative
Strand: Minus strand
Length: 79321 bases
Position: chr4:58375337-58454657
Accession: 1923334
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_129S1SvImJ_P0065893	RRM_5	PF13893.6	1.1e-61	1	3
MGP_129S1SvImJ_P0065893	RRM_5	PF13893.6	1.1e-61	2	3
MGP_129S1SvImJ_P0065893	RRM_5	PF13893.6	1.1e-61	3	3
MGP_129S1SvImJ_P0065892	RRM_5	PF13893.6	1.2e-61	1	3
MGP_129S1SvImJ_P0065892	RRM_5	PF13893.6	1.2e-61	2	3
MGP_129S1SvImJ_P0065892	RRM_5	PF13893.6	1.2e-61	3	3
MGP_129S1SvImJ_P0065895	RRM_5	PF13893.6	1.3e-47	1	1
MGP_129S1SvImJ_P0065898	RRM_5	PF13893.6	7.2e-06	1	1
MGP_129S1SvImJ_P0065893	RRM_1	PF00076.22	2.1e-31	1	3
MGP_129S1SvImJ_P0065893	RRM_1	PF00076.22	2.1e-31	2	3
MGP_129S1SvImJ_P0065893	RRM_1	PF00076.22	2.1e-31	3	3
MGP_129S1SvImJ_P0065892	RRM_1	PF00076.22	2.2e-31	1	3
MGP_129S1SvImJ_P0065892	RRM_1	PF00076.22	2.2e-31	2	3
MGP_129S1SvImJ_P0065892	RRM_1	PF00076.22	2.2e-31	3	3
MGP_129S1SvImJ_P0065898	RRM_1	PF00076.22	2.8e-11	1	1
MGP_129S1SvImJ_P0065895	RRM_1	PF00076.22	3.9e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_129S1SvImJ_T0065892	-	6677	XM_006537851	MGP_129S1SvImJ_P0065892	554 (aa)	XP_006537914	Q8BHD7
MGP_129S1SvImJ_T0065893	-	3409	-	MGP_129S1SvImJ_P0065893	551 (aa)	-	-
MGP_129S1SvImJ_T0065896	-	1286	-	MGP_129S1SvImJ_P0065896	45 (aa)	-	-
MGP_129S1SvImJ_T0065897	-	558	-	MGP_129S1SvImJ_P0065897	41 (aa)	-	-
MGP_129S1SvImJ_T0065894	-	669	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0065895	-	566	-	MGP_129S1SvImJ_P0065895	188 (aa)	-	-
MGP_129S1SvImJ_T0065900	-	606	-	MGP_129S1SvImJ_P0065900	104 (aa)	-	-
MGP_129S1SvImJ_T0065898	-	550	-	MGP_129S1SvImJ_P0065898	146 (aa)	-	-
MGP_129S1SvImJ_T0065899	-	447	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_129S1SvImJ_G0028336's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_129S1SvImJ_G0028336's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_129S1SvImJ_G0028336	Ptbp3	91	78.195	MGP_129S1SvImJ_G0027826	Ptbp2	99	69.835
MGP_129S1SvImJ_G0028336	Ptbp3	83	35.537	MGP_129S1SvImJ_G0031962	Hnrnpl	55	36.207