EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_129S1SvImJ_G0028739 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc4
Alias: -
Full Name: poly(A) binding protein%2C cytoplasmic 4
Gene Type: protein_coding
Species: Mus_musculus_129s1svimj
Status: putative
Strand: Plus strand
Length: 52377 bases
Position: chr4:124691619-124743995
Accession: 2385206
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_129S1SvImJ_P0067644	PABP	PF00658.18	2.5e-31	1	1
MGP_129S1SvImJ_P0067640	PABP	PF00658.18	2.7e-31	1	1
MGP_129S1SvImJ_P0067641	PABP	PF00658.18	2.8e-31	1	1
MGP_129S1SvImJ_P0067643	PABP	PF00658.18	3e-31	1	1
MGP_129S1SvImJ_P0067644	RRM_5	PF13893.6	8.6e-09	1	2
MGP_129S1SvImJ_P0067644	RRM_5	PF13893.6	8.6e-09	2	2
MGP_129S1SvImJ_P0067640	RRM_5	PF13893.6	1.1e-08	1	2
MGP_129S1SvImJ_P0067640	RRM_5	PF13893.6	1.1e-08	2	2
MGP_129S1SvImJ_P0067641	RRM_5	PF13893.6	1.2e-08	1	1
MGP_129S1SvImJ_P0067643	RRM_5	PF13893.6	1.3e-08	1	2
MGP_129S1SvImJ_P0067643	RRM_5	PF13893.6	1.3e-08	2	2
MGP_129S1SvImJ_P0067644	RRM_1	PF00076.22	8.9e-76	1	4
MGP_129S1SvImJ_P0067644	RRM_1	PF00076.22	8.9e-76	2	4
MGP_129S1SvImJ_P0067644	RRM_1	PF00076.22	8.9e-76	3	4
MGP_129S1SvImJ_P0067644	RRM_1	PF00076.22	8.9e-76	4	4
MGP_129S1SvImJ_P0067640	RRM_1	PF00076.22	1e-75	1	4
MGP_129S1SvImJ_P0067640	RRM_1	PF00076.22	1e-75	2	4
MGP_129S1SvImJ_P0067640	RRM_1	PF00076.22	1e-75	3	4
MGP_129S1SvImJ_P0067640	RRM_1	PF00076.22	1e-75	4	4
MGP_129S1SvImJ_P0067641	RRM_1	PF00076.22	1.2e-75	1	4
MGP_129S1SvImJ_P0067641	RRM_1	PF00076.22	1.2e-75	2	4
MGP_129S1SvImJ_P0067641	RRM_1	PF00076.22	1.2e-75	3	4
MGP_129S1SvImJ_P0067641	RRM_1	PF00076.22	1.2e-75	4	4
MGP_129S1SvImJ_P0067643	RRM_1	PF00076.22	1.3e-75	1	4
MGP_129S1SvImJ_P0067643	RRM_1	PF00076.22	1.3e-75	2	4
MGP_129S1SvImJ_P0067643	RRM_1	PF00076.22	1.3e-75	3	4
MGP_129S1SvImJ_P0067643	RRM_1	PF00076.22	1.3e-75	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_129S1SvImJ_T0067641	-	3008	-	MGP_129S1SvImJ_P0067641	599 (aa)	-	-
MGP_129S1SvImJ_T0067640	-	3069	-	MGP_129S1SvImJ_P0067640	586 (aa)	-	-
MGP_129S1SvImJ_T0067643	-	2976	-	MGP_129S1SvImJ_P0067643	615 (aa)	-	-
MGP_129S1SvImJ_T0067642	-	2644	-	MGP_129S1SvImJ_P0067642	138 (aa)	-	-
MGP_129S1SvImJ_T0067645	-	692	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0067644	-	2657	-	MGP_129S1SvImJ_P0067644	570 (aa)	-	-
MGP_129S1SvImJ_T0067646	-	1146	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0067638	-	245	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0067639	-	3103	-	MGP_129S1SvImJ_P0067639	615 (aa)	-	-

Gene Model

Click here to download MGP_129S1SvImJ_G0028739's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_129S1SvImJ_G0028739's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_129S1SvImJ_G0028739	Pabpc4	94	31.061	MGP_129S1SvImJ_G0034474	Elavl3	92	33.735
MGP_129S1SvImJ_G0028739	Pabpc4	53	37.113	MGP_129S1SvImJ_G0034902	Celf6	68	37.113
MGP_129S1SvImJ_G0028739	Pabpc4	100	87.681	MGP_129S1SvImJ_G0024369	Pabpc2	98	66.610
MGP_129S1SvImJ_G0028739	Pabpc4	88	32.258	MGP_129S1SvImJ_G0026137	Celf1	70	38.636
MGP_129S1SvImJ_G0028739	Pabpc4	57	36.709	MGP_129S1SvImJ_G0019470	Rbfox3	67	39.130
MGP_129S1SvImJ_G0028739	Pabpc4	100	86.232	MGP_129S1SvImJ_G0023139	Pabpc6	99	67.285
MGP_129S1SvImJ_G0028739	Pabpc4	99	34.848	MGP_129S1SvImJ_G0033333	Elavl1	95	34.513
MGP_129S1SvImJ_G0028739	Pabpc4	99	32.576	MGP_129S1SvImJ_G0028445	Elavl2	89	34.940
MGP_129S1SvImJ_G0028739	Pabpc4	100	39.394	MGP_129S1SvImJ_G0030975	Tia1	78	39.394
MGP_129S1SvImJ_G0028739	Pabpc4	99	32.576	MGP_129S1SvImJ_G0028576	Elavl4	87	32.759
MGP_129S1SvImJ_G0028739	Pabpc4	100	79.710	MGP_129S1SvImJ_G0026834	Pabpc1l	98	61.160
MGP_129S1SvImJ_G0028739	Pabpc4	100	34.167	MGP_129S1SvImJ_G0033083	Tial1	78	30.769
MGP_129S1SvImJ_G0028739	Pabpc4	51	34.722	MGP_129S1SvImJ_G0035748	Rbmx	77	37.662
MGP_129S1SvImJ_G0028739	Pabpc4	51	37.500	MGP_129S1SvImJ_G0024209	Celf4	57	37.500
MGP_129S1SvImJ_G0028739	Pabpc4	51	37.500	MGP_129S1SvImJ_G0025332	Celf2	59	37.500
MGP_129S1SvImJ_G0028739	Pabpc4	100	94.928	MGP_129S1SvImJ_G0021796	Pabpc1	98	77.342
MGP_129S1SvImJ_G0028739	Pabpc4	100	70.370	MGP_129S1SvImJ_G0027190	Pabpc4l	98	67.969
MGP_129S1SvImJ_G0028739	Pabpc4	50	32.394	MGP_129S1SvImJ_G0027553	Celf3	69	33.784
MGP_129S1SvImJ_G0028739	Pabpc4	90	37.500	MGP_129S1SvImJ_G0035541	Rbm3	74	40.000
MGP_129S1SvImJ_G0028739	Pabpc4	51	34.722	MGP_129S1SvImJ_G0033806	-	59	36.364
MGP_129S1SvImJ_G0028739	Pabpc4	100	68.841	MGP_129S1SvImJ_G0036044	Pabpc5	94	65.432