EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_129S1SvImJ_G0028908 (Gene tree)
Gene ID: -
Gene Symbol: Lin28a
Alias: AL024421|ENSMUSG00000070700|Gm10299|Lin-28|Lin28|Lin28a|Tex17|lin-28A
Full Name: lin-28 homolog A (C. elegans)
Gene Type: protein_coding
Species: Mus_musculus_129s1svimj
Status: putative
Strand: Minus strand
Length: 16603 bases
Position: chr4:136317262-136333864
Accession: 1890546
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_129S1SvImJ_P0068429	CSD	PF00313.22	2.9e-16	1	1
MGP_129S1SvImJ_P0068432	CSD	PF00313.22	2.6e-12	1	1
MGP_129S1SvImJ_P0068431	CSD	PF00313.22	7.5e-05	1	1
MGP_129S1SvImJ_P0068430	CSD	PF00313.22	7.8e-05	1	1
MGP_129S1SvImJ_P0068429	zf-CCHC	PF00098.23	7e-08	1	1
MGP_129S1SvImJ_P0068430	zf-CCHC	PF00098.23	1.8e-05	1	1
MGP_129S1SvImJ_P0068431	zf-CCHC	PF00098.23	2.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_129S1SvImJ_T0068429	-	3476	XM_011250361	MGP_129S1SvImJ_P0068429	209 (aa)	XP_011248663	Q8K3Y3
MGP_129S1SvImJ_T0068431	-	484	-	MGP_129S1SvImJ_P0068431	81 (aa)	-	-
MGP_129S1SvImJ_T0068430	-	394	-	MGP_129S1SvImJ_P0068430	83 (aa)	-	-
MGP_129S1SvImJ_T0068432	-	478	-	MGP_129S1SvImJ_P0068432	75 (aa)	-	-

Gene Model

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Protein-Protein Interaction (PPI)

Clik here to download MGP_129S1SvImJ_G0028908's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_129S1SvImJ_G0028908	Lin28a	100	82.667	MGP_129S1SvImJ_G0017209	Lin28b	66	69.444