EuRBPDB

Description

Ensembl ID: MGP_129S1SvImJ_G0028965 (Gene tree)
Gene ID: -
Gene Symbol: Hnrnpr
Alias: 2610003J05Rik|2610528B01Rik|Hnrpr|Hnrpr {ECO:0000313|EMBL:AAH38051.1,GN ECO:0000313|MGI:MGI:1891692}|hnRNPR
Full Name: heterogeneous nuclear ribonucleoprotein R
Gene Type: protein_coding
Species: Mus_musculus_129s1svimj
Status: putative
Strand: Plus strand
Length: 55190 bases
Position: chr4:138854710-138909899
Accession: 1891692
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_129S1SvImJ_P0068684	RRM_5	PF13893.6	4.5e-06	1	1
MGP_129S1SvImJ_P0068684	RRM_1	PF00076.22	1.1e-44	1	3
MGP_129S1SvImJ_P0068684	RRM_1	PF00076.22	1.1e-44	2	3
MGP_129S1SvImJ_P0068684	RRM_1	PF00076.22	1.1e-44	3	3
MGP_129S1SvImJ_P0068685	RRM_1	PF00076.22	2.3e-43	1	3
MGP_129S1SvImJ_P0068685	RRM_1	PF00076.22	2.3e-43	2	3
MGP_129S1SvImJ_P0068685	RRM_1	PF00076.22	2.3e-43	3	3
MGP_129S1SvImJ_P0068682	RRM_1	PF00076.22	3.4e-43	1	3
MGP_129S1SvImJ_P0068682	RRM_1	PF00076.22	3.4e-43	2	3
MGP_129S1SvImJ_P0068682	RRM_1	PF00076.22	3.4e-43	3	3
MGP_129S1SvImJ_P0068683	RRM_1	PF00076.22	3.4e-43	1	3
MGP_129S1SvImJ_P0068683	RRM_1	PF00076.22	3.4e-43	2	3
MGP_129S1SvImJ_P0068683	RRM_1	PF00076.22	3.4e-43	3	3
MGP_129S1SvImJ_P0068688	RRM_1	PF00076.22	5.7e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_129S1SvImJ_T0068690	-	474	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0068691	-	3783	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0068692	-	1918	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0068682	-	21299	XM_006539221	MGP_129S1SvImJ_P0068682	632 (aa)	XP_006539284	A2AW40
MGP_129S1SvImJ_T0068683	-	2522	-	MGP_129S1SvImJ_P0068683	632 (aa)	-	-
MGP_129S1SvImJ_T0068684	-	5968	-	MGP_129S1SvImJ_P0068684	740 (aa)	-	-
MGP_129S1SvImJ_T0068685	-	2486	-	MGP_129S1SvImJ_P0068685	531 (aa)	-	-
MGP_129S1SvImJ_T0068686	-	859	-	MGP_129S1SvImJ_P0068686	103 (aa)	-	-
MGP_129S1SvImJ_T0068687	-	576	-	MGP_129S1SvImJ_P0068687	72 (aa)	-	-
MGP_129S1SvImJ_T0068688	-	980	-	MGP_129S1SvImJ_P0068688	270 (aa)	-	-
MGP_129S1SvImJ_T0068689	-	292	-	MGP_129S1SvImJ_P0068689	73 (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_129S1SvImJ_G0028965	Hnrnpr	59	56.329	MGP_129S1SvImJ_G0027329	Rbm46	65	56.774
MGP_129S1SvImJ_G0028965	Hnrnpr	85	45.815	MGP_129S1SvImJ_G0029587	Rbm47	88	59.859
MGP_129S1SvImJ_G0028965	Hnrnpr	59	52.997	MGP_129S1SvImJ_G0025037	A1cf	51	53.896
MGP_129S1SvImJ_G0028965	Hnrnpr	100	82.486	MGP_129S1SvImJ_G0035109	Syncrip	99	81.911
MGP_129S1SvImJ_G0028965	Hnrnpr	57	37.908	MGP_129S1SvImJ_G0024290	Dnd1	62	33.040