EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_129S1SvImJ_G0029129 (Gene tree)
Gene ID: -
Gene Symbol: Tardbp
Alias: 1190002A23Rik|C85084|TARDBP|TDP-43|Tdp43
Full Name: TAR DNA binding protein
Gene Type: protein_coding
Species: Mus_musculus_129s1svimj
Status: putative
Strand: Minus strand
Length: 21315 bases
Position: chr4:152352514-152373828
Accession: 2387629
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_129S1SvImJ_P0069288	RRM_1	PF00076.22	1.2e-26	1	2
MGP_129S1SvImJ_P0069288	RRM_1	PF00076.22	1.2e-26	2	2
MGP_129S1SvImJ_P0069281	RRM_1	PF00076.22	4.4e-26	1	2
MGP_129S1SvImJ_P0069281	RRM_1	PF00076.22	4.4e-26	2	2
MGP_129S1SvImJ_P0069266	RRM_1	PF00076.22	4.5e-26	1	2
MGP_129S1SvImJ_P0069266	RRM_1	PF00076.22	4.5e-26	2	2
MGP_129S1SvImJ_P0069285	RRM_1	PF00076.22	4.5e-26	1	2
MGP_129S1SvImJ_P0069285	RRM_1	PF00076.22	4.5e-26	2	2
MGP_129S1SvImJ_P0069265	RRM_1	PF00076.22	4.8e-26	1	2
MGP_129S1SvImJ_P0069265	RRM_1	PF00076.22	4.8e-26	2	2
MGP_129S1SvImJ_P0069287	RRM_1	PF00076.22	4.8e-26	1	2
MGP_129S1SvImJ_P0069287	RRM_1	PF00076.22	4.8e-26	2	2
MGP_129S1SvImJ_P0069263	RRM_1	PF00076.22	4.9e-26	1	2
MGP_129S1SvImJ_P0069263	RRM_1	PF00076.22	4.9e-26	2	2
MGP_129S1SvImJ_P0069286	RRM_1	PF00076.22	4.9e-26	1	2
MGP_129S1SvImJ_P0069286	RRM_1	PF00076.22	4.9e-26	2	2
MGP_129S1SvImJ_P0069264	RRM_1	PF00076.22	1.2e-25	1	2
MGP_129S1SvImJ_P0069264	RRM_1	PF00076.22	1.2e-25	2	2
MGP_129S1SvImJ_P0069290	RRM_1	PF00076.22	4e-15	1	1
MGP_129S1SvImJ_P0069291	RRM_1	PF00076.22	4.9e-11	1	1
MGP_129S1SvImJ_P0069282	RRM_1	PF00076.22	6.6e-09	1	1
MGP_129S1SvImJ_P0069284	RRM_1	PF00076.22	3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_129S1SvImJ_T0069290	-	818	-	MGP_129S1SvImJ_P0069290	243 (aa)	-	-
MGP_129S1SvImJ_T0069291	-	740	-	MGP_129S1SvImJ_P0069291	149 (aa)	-	-
MGP_129S1SvImJ_T0069292	-	370	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0069278	-	1304	-	MGP_129S1SvImJ_P0069278	285 (aa)	-	-
MGP_129S1SvImJ_T0069279	-	684	-	MGP_129S1SvImJ_P0069279	137 (aa)	-	-
MGP_129S1SvImJ_T0069276	-	741	-	MGP_129S1SvImJ_P0069276	175 (aa)	-	-
MGP_129S1SvImJ_T0069277	-	781	-	MGP_129S1SvImJ_P0069277	140 (aa)	-	-
MGP_129S1SvImJ_T0069274	-	2006	-	MGP_129S1SvImJ_P0069274	298 (aa)	-	-
MGP_129S1SvImJ_T0069275	-	1011	-	MGP_129S1SvImJ_P0069275	34 (aa)	-	-
MGP_129S1SvImJ_T0069272	-	629	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0069273	-	358	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0069270	-	676	-	MGP_129S1SvImJ_P0069270	88 (aa)	-	-
MGP_129S1SvImJ_T0069271	-	908	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0069283	-	814	-	MGP_129S1SvImJ_P0069283	19 (aa)	-	-
MGP_129S1SvImJ_T0069282	-	570	-	MGP_129S1SvImJ_P0069282	128 (aa)	-	-
MGP_129S1SvImJ_T0069281	-	1904	-	MGP_129S1SvImJ_P0069281	295 (aa)	-	-
MGP_129S1SvImJ_T0069280	-	517	-	MGP_129S1SvImJ_P0069280	77 (aa)	-	-
MGP_129S1SvImJ_T0069287	-	1011	-	MGP_129S1SvImJ_P0069287	304 (aa)	-	-
MGP_129S1SvImJ_T0069286	-	923	-	MGP_129S1SvImJ_P0069286	302 (aa)	-	-
MGP_129S1SvImJ_T0069285	-	1096	-	MGP_129S1SvImJ_P0069285	298 (aa)	-	-
MGP_129S1SvImJ_T0069284	-	748	-	MGP_129S1SvImJ_P0069284	84 (aa)	-	-
MGP_129S1SvImJ_T0069289	-	1411	-	MGP_129S1SvImJ_P0069289	84 (aa)	-	-
MGP_129S1SvImJ_T0069288	-	709	-	MGP_129S1SvImJ_P0069288	199 (aa)	-	-
MGP_129S1SvImJ_T0069263	-	6412	XM_011250237	MGP_129S1SvImJ_P0069263	302 (aa)	XP_011248539	Q921F2
MGP_129S1SvImJ_T0069265	-	6500	-	MGP_129S1SvImJ_P0069265	304 (aa)	-	-
MGP_129S1SvImJ_T0069264	-	7464	-	MGP_129S1SvImJ_P0069264	414 (aa)	-	-
MGP_129S1SvImJ_T0069267	-	1773	-	MGP_129S1SvImJ_P0069267	298 (aa)	-	-
MGP_129S1SvImJ_T0069266	-	6482	-	MGP_129S1SvImJ_P0069266	298 (aa)	-	-
MGP_129S1SvImJ_T0069269	-	529	-	MGP_129S1SvImJ_P0069269	98 (aa)	-	-
MGP_129S1SvImJ_T0069268	-	731	-	-	- (aa)	-	-

Gene Model

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Protein-Protein Interaction (PPI)

Clik here to download MGP_129S1SvImJ_G0029129's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_129S1SvImJ_G0029129	Tardbp	77	38.194	MGP_129S1SvImJ_G0029780	Hnrnpd	75	51.389
MGP_129S1SvImJ_G0029129	Tardbp	77	31.447	MGP_129S1SvImJ_G0029782	Hnrnpdl	64	30.000
MGP_129S1SvImJ_G0029129	Tardbp	79	34.021	MGP_129S1SvImJ_G0029969	Msi1	62	34.021
MGP_129S1SvImJ_G0029129	Tardbp	92	35.000	MGP_129S1SvImJ_G0035748	Rbmx	78	35.000
MGP_129S1SvImJ_G0029129	Tardbp	79	31.818	MGP_129S1SvImJ_G0018924	Msi2	100	35.398
MGP_129S1SvImJ_G0029129	Tardbp	88	31.818	MGP_129S1SvImJ_G0017492	Dazap1	89	35.065
MGP_129S1SvImJ_G0029129	Tardbp	86	33.146	MGP_129S1SvImJ_G0018269	Hnrnpab	82	32.099
MGP_129S1SvImJ_G0029129	Tardbp	94	30.282	MGP_129S1SvImJ_G0030734	Hnrnpa2b1	66	30.348
MGP_129S1SvImJ_G0029129	Tardbp	66	34.074	MGP_129S1SvImJ_G0022435	Hnrnpa1	53	30.151
MGP_129S1SvImJ_G0029129	Tardbp	72	38.806	MGP_129S1SvImJ_G0033333	Elavl1	59	31.481