EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_129S1SvImJ_G0029181 (Gene tree)
Gene ID: -
Gene Symbol: Chd5
Alias: 4930532L22Rik|AW060752|B230399N07Rik|CHD-5|Kiaa0444
Full Name: chromodomain helicase DNA binding protein 5
Gene Type: protein_coding
Species: Mus_musculus_129s1svimj
Status: putative
Strand: Plus strand
Length: 58494 bases
Position: chr4:156453410-156511903
Accession: 3036258
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_129S1SvImJ_P0069570	ResIII	PF04851.15	2.4e-07	1	1
MGP_129S1SvImJ_P0069572	ResIII	PF04851.15	2.5e-07	1	1
MGP_129S1SvImJ_P0069571	ResIII	PF04851.15	2.5e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_129S1SvImJ_T0069574	-	6219	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0069571	-	9460	-	MGP_129S1SvImJ_P0069571	1952 (aa)	-	-
MGP_129S1SvImJ_T0069570	-	9349	XM_006538929	MGP_129S1SvImJ_P0069570	1915 (aa)	XP_006538992	A2A8L1
MGP_129S1SvImJ_T0069573	-	280	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0069572	-	9096	-	MGP_129S1SvImJ_P0069572	1946 (aa)	-	-

Gene Model

Click here to download MGP_129S1SvImJ_G0029181's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_129S1SvImJ_G0029181's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_129S1SvImJ_G0029181	Chd5	51	34.657	MGP_129S1SvImJ_G0026810	Chd6	66	36.621
MGP_129S1SvImJ_G0029181	Chd5	97	70.305	MGP_129S1SvImJ_G0018528	Chd3	95	71.106
MGP_129S1SvImJ_G0029181	Chd5	91	73.096	MGP_129S1SvImJ_G0031285	Chd4	96	72.367