EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_129S1SvImJ_G0029780 (Gene tree)
Gene ID: -
Gene Symbol: Hnrnpd
Alias: Auf1|Hnrpd
Full Name: heterogeneous nuclear ribonucleoprotein D
Gene Type: protein_coding
Species: Mus_musculus_129s1svimj
Status: putative
Strand: Minus strand
Length: 22837 bases
Position: chr5:101404520-101427356
Accession: 101947
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_129S1SvImJ_P0072786	RRM_1	PF00076.22	5.2e-36	1	2
MGP_129S1SvImJ_P0072786	RRM_1	PF00076.22	5.2e-36	2	2
MGP_129S1SvImJ_P0072784	RRM_1	PF00076.22	8.5e-36	1	2
MGP_129S1SvImJ_P0072784	RRM_1	PF00076.22	8.5e-36	2	2
MGP_129S1SvImJ_P0072785	RRM_1	PF00076.22	8.9e-36	1	2
MGP_129S1SvImJ_P0072785	RRM_1	PF00076.22	8.9e-36	2	2
MGP_129S1SvImJ_P0072783	RRM_1	PF00076.22	1.1e-35	1	2
MGP_129S1SvImJ_P0072783	RRM_1	PF00076.22	1.1e-35	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_129S1SvImJ_T0072786	-	1453	-	MGP_129S1SvImJ_P0072786	259 (aa)	-	-
MGP_129S1SvImJ_T0072787	-	1117	-	MGP_129S1SvImJ_P0072787	215 (aa)	-	-
MGP_129S1SvImJ_T0072784	-	1982	-	MGP_129S1SvImJ_P0072784	300 (aa)	-	-
MGP_129S1SvImJ_T0072785	-	1586	-	MGP_129S1SvImJ_P0072785	308 (aa)	-	-
MGP_129S1SvImJ_T0072783	-	6697	XM_006534735	MGP_129S1SvImJ_P0072783	327 (aa)	XP_006534798	Q60668
MGP_129S1SvImJ_T0072788	-	737	-	MGP_129S1SvImJ_P0072788	150 (aa)	-	-
MGP_129S1SvImJ_T0072789	-	699	-	MGP_129S1SvImJ_P0072789	131 (aa)	-	-
MGP_129S1SvImJ_T0072791	-	425	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0072790	-	1020	-	MGP_129S1SvImJ_P0072790	58 (aa)	-	-

Gene Model

Click here to download MGP_129S1SvImJ_G0029780's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_129S1SvImJ_G0029780's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_129S1SvImJ_G0029780	Hnrnpd	64	37.931	MGP_129S1SvImJ_G0035541	Rbm3	80	36.709
MGP_129S1SvImJ_G0029780	Hnrnpd	80	72.674	MGP_129S1SvImJ_G0029782	Hnrnpdl	87	65.074
MGP_129S1SvImJ_G0029780	Hnrnpd	75	51.389	MGP_129S1SvImJ_G0029129	Tardbp	77	38.194
MGP_129S1SvImJ_G0029780	Hnrnpd	78	38.323	MGP_129S1SvImJ_G0025856	Hnrnpa3	51	38.500
MGP_129S1SvImJ_G0029780	Hnrnpd	65	40.000	MGP_129S1SvImJ_G0035748	Rbmx	82	43.750
MGP_129S1SvImJ_G0029780	Hnrnpd	89	44.162	MGP_129S1SvImJ_G0029969	Msi1	62	42.857
MGP_129S1SvImJ_G0029780	Hnrnpd	77	36.257	MGP_129S1SvImJ_G0020627	Hnrnpa0	86	34.173
MGP_129S1SvImJ_G0029780	Hnrnpd	97	70.616	MGP_129S1SvImJ_G0018269	Hnrnpab	77	70.183
MGP_129S1SvImJ_G0029780	Hnrnpd	81	38.693	MGP_129S1SvImJ_G0017492	Dazap1	99	39.521
MGP_129S1SvImJ_G0029780	Hnrnpd	87	58.025	MGP_129S1SvImJ_G0018924	Msi2	100	53.982
MGP_129S1SvImJ_G0029780	Hnrnpd	65	41.818	MGP_129S1SvImJ_G0033806	-	67	45.833
MGP_129S1SvImJ_G0029780	Hnrnpd	69	35.294	MGP_129S1SvImJ_G0016035	Boll	62	30.337
MGP_129S1SvImJ_G0029780	Hnrnpd	68	37.931	MGP_129S1SvImJ_G0017486	Cirbp	83	37.931
MGP_129S1SvImJ_G0029780	Hnrnpd	83	41.053	MGP_129S1SvImJ_G0030734	Hnrnpa2b1	72	41.148