EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_129S1SvImJ_G0029969 (Gene tree)
Gene ID: -
Gene Symbol: Msi1
Alias: Msi1|Msi1h|Musahi1|m-Msi-1
Full Name: musashi RNA-binding protein 1
Gene Type: protein_coding
Species: Mus_musculus_129s1svimj
Status: putative
Strand: Plus strand
Length: 29304 bases
Position: chr5:118309003-118338306
Accession: 107376
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_129S1SvImJ_P0073685	RRM_1	PF00076.22	6.9e-33	1	2
MGP_129S1SvImJ_P0073685	RRM_1	PF00076.22	6.9e-33	2	2
MGP_129S1SvImJ_P0073686	RRM_1	PF00076.22	1.6e-28	1	2
MGP_129S1SvImJ_P0073686	RRM_1	PF00076.22	1.6e-28	2	2
MGP_129S1SvImJ_P0073690	RRM_1	PF00076.22	1.2e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_129S1SvImJ_T0073688	-	806	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0073689	-	581	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0073691	-	596	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0073690	-	726	-	MGP_129S1SvImJ_P0073690	196 (aa)	-	-
MGP_129S1SvImJ_T0073684	-	2626	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0073685	-	2850	-	MGP_129S1SvImJ_P0073685	362 (aa)	-	-
MGP_129S1SvImJ_T0073686	-	807	-	MGP_129S1SvImJ_P0073686	268 (aa)	-	-
MGP_129S1SvImJ_T0073687	-	367	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_129S1SvImJ_G0029969's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_129S1SvImJ_G0029969's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_129S1SvImJ_G0029969	Msi1	59	36.782	MGP_129S1SvImJ_G0025856	Hnrnpa3	51	36.967
MGP_129S1SvImJ_G0029969	Msi1	59	39.080	MGP_129S1SvImJ_G0022435	Hnrnpa1	63	39.080
MGP_129S1SvImJ_G0029969	Msi1	88	42.308	MGP_129S1SvImJ_G0017492	Dazap1	98	44.311
MGP_129S1SvImJ_G0029969	Msi1	61	51.064	MGP_129S1SvImJ_G0026952	Rbm38	66	46.809
MGP_129S1SvImJ_G0029969	Msi1	51	38.983	MGP_129S1SvImJ_G0017486	Cirbp	87	40.351
MGP_129S1SvImJ_G0029969	Msi1	56	41.379	MGP_129S1SvImJ_G0033083	Tial1	69	31.469
MGP_129S1SvImJ_G0029969	Msi1	62	42.857	MGP_129S1SvImJ_G0029780	Hnrnpd	89	44.162
MGP_129S1SvImJ_G0029969	Msi1	58	48.052	MGP_129S1SvImJ_G0029782	Hnrnpdl	75	39.676
MGP_129S1SvImJ_G0029969	Msi1	57	42.949	MGP_129S1SvImJ_G0020627	Hnrnpa0	59	43.646
MGP_129S1SvImJ_G0029969	Msi1	99	75.665	MGP_129S1SvImJ_G0018924	Msi2	100	90.323
MGP_129S1SvImJ_G0029969	Msi1	58	48.052	MGP_129S1SvImJ_G0018269	Hnrnpab	79	40.800
MGP_129S1SvImJ_G0029969	Msi1	61	43.750	MGP_129S1SvImJ_G0030734	Hnrnpa2b1	91	41.379
MGP_129S1SvImJ_G0029969	Msi1	62	34.021	MGP_129S1SvImJ_G0029129	Tardbp	79	34.021