EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_129S1SvImJ_G0030360 (Gene tree)
Gene ID: -
Gene Symbol: Cpsf4
Alias: 30kDa|C79664|Cpsf30
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Mus_musculus_129s1svimj
Status: putative
Strand: Plus strand
Length: 14851 bases
Position: chr5:150593597-150608447
Accession: 1861602
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_129S1SvImJ_P0075830	zf-CCCH	PF00642.24	1.1e-20	1	2
MGP_129S1SvImJ_P0075830	zf-CCCH	PF00642.24	1.1e-20	2	2
MGP_129S1SvImJ_P0075825	zf-CCCH	PF00642.24	3e-20	1	2
MGP_129S1SvImJ_P0075825	zf-CCCH	PF00642.24	3e-20	2	2
MGP_129S1SvImJ_P0075828	zf-CCCH	PF00642.24	3.1e-20	1	2
MGP_129S1SvImJ_P0075828	zf-CCCH	PF00642.24	3.1e-20	2	2
MGP_129S1SvImJ_P0075827	zf-CCCH	PF00642.24	5.9e-20	1	2
MGP_129S1SvImJ_P0075827	zf-CCCH	PF00642.24	5.9e-20	2	2
MGP_129S1SvImJ_P0075826	zf-CCCH	PF00642.24	2.4e-15	1	2
MGP_129S1SvImJ_P0075826	zf-CCCH	PF00642.24	2.4e-15	2	2
MGP_129S1SvImJ_P0075826	zf-CCHC	PF00098.23	5.6e-06	1	1
MGP_129S1SvImJ_P0075825	zf-CCHC	PF00098.23	6.7e-06	1	1
MGP_129S1SvImJ_P0075828	zf-CCHC	PF00098.23	6.7e-06	1	1
MGP_129S1SvImJ_P0075827	zf-CCHC	PF00098.23	7.6e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_129S1SvImJ_T0075826	-	1615	-	MGP_129S1SvImJ_P0075826	211 (aa)	-	-
MGP_129S1SvImJ_T0075830	-	841	-	MGP_129S1SvImJ_P0075830	207 (aa)	-	-
MGP_129S1SvImJ_T0075825	-	1722	XM_006504845	MGP_129S1SvImJ_P0075825	243 (aa)	XP_006504908	Q8BQZ5
MGP_129S1SvImJ_T0075828	-	1396	-	MGP_129S1SvImJ_P0075828	244 (aa)	-	-
MGP_129S1SvImJ_T0075829	-	1210	-	MGP_129S1SvImJ_P0075829	62 (aa)	-	-
MGP_129S1SvImJ_T0075831	-	2976	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0075827	-	1765	-	MGP_129S1SvImJ_P0075827	269 (aa)	-	-

Gene Model

Click here to download MGP_129S1SvImJ_G0030360's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_129S1SvImJ_G0030360's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_129S1SvImJ_G0030360	Cpsf4	86	52.358	MGP_129S1SvImJ_G0019353	Cpsf4l	82	62.400