EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_129S1SvImJ_G0030834 (Gene tree)
Gene ID: -
Gene Symbol: Prdm5
Alias: 4432417F03Rik|6530401I24Rik|AI197291|E130112L17Rik|PFM2
Full Name: PR domain containing 5
Gene Type: protein_coding
Species: Mus_musculus_129s1svimj
Status: putative
Strand: Plus strand
Length: 164512 bases
Position: chr6:65713018-65877529
Accession: 1918029
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_129S1SvImJ_P0077887	zf-C2H2	PF00096.26	5.7e-59	1	9
MGP_129S1SvImJ_P0077887	zf-C2H2	PF00096.26	5.7e-59	2	9
MGP_129S1SvImJ_P0077887	zf-C2H2	PF00096.26	5.7e-59	3	9
MGP_129S1SvImJ_P0077887	zf-C2H2	PF00096.26	5.7e-59	4	9
MGP_129S1SvImJ_P0077887	zf-C2H2	PF00096.26	5.7e-59	5	9
MGP_129S1SvImJ_P0077887	zf-C2H2	PF00096.26	5.7e-59	6	9
MGP_129S1SvImJ_P0077887	zf-C2H2	PF00096.26	5.7e-59	7	9
MGP_129S1SvImJ_P0077887	zf-C2H2	PF00096.26	5.7e-59	8	9
MGP_129S1SvImJ_P0077887	zf-C2H2	PF00096.26	5.7e-59	9	9
MGP_129S1SvImJ_P0077882	zf-C2H2	PF00096.26	1e-58	1	9
MGP_129S1SvImJ_P0077882	zf-C2H2	PF00096.26	1e-58	2	9
MGP_129S1SvImJ_P0077882	zf-C2H2	PF00096.26	1e-58	3	9
MGP_129S1SvImJ_P0077882	zf-C2H2	PF00096.26	1e-58	4	9
MGP_129S1SvImJ_P0077882	zf-C2H2	PF00096.26	1e-58	5	9
MGP_129S1SvImJ_P0077882	zf-C2H2	PF00096.26	1e-58	6	9
MGP_129S1SvImJ_P0077882	zf-C2H2	PF00096.26	1e-58	7	9
MGP_129S1SvImJ_P0077882	zf-C2H2	PF00096.26	1e-58	8	9
MGP_129S1SvImJ_P0077882	zf-C2H2	PF00096.26	1e-58	9	9
MGP_129S1SvImJ_P0077885	zf-C2H2	PF00096.26	1e-48	1	9
MGP_129S1SvImJ_P0077885	zf-C2H2	PF00096.26	1e-48	2	9
MGP_129S1SvImJ_P0077885	zf-C2H2	PF00096.26	1e-48	3	9
MGP_129S1SvImJ_P0077885	zf-C2H2	PF00096.26	1e-48	4	9
MGP_129S1SvImJ_P0077885	zf-C2H2	PF00096.26	1e-48	5	9
MGP_129S1SvImJ_P0077885	zf-C2H2	PF00096.26	1e-48	6	9
MGP_129S1SvImJ_P0077885	zf-C2H2	PF00096.26	1e-48	7	9
MGP_129S1SvImJ_P0077885	zf-C2H2	PF00096.26	1e-48	8	9
MGP_129S1SvImJ_P0077885	zf-C2H2	PF00096.26	1e-48	9	9
MGP_129S1SvImJ_P0077884	zf-C2H2	PF00096.26	8.2e-27	1	5
MGP_129S1SvImJ_P0077884	zf-C2H2	PF00096.26	8.2e-27	2	5
MGP_129S1SvImJ_P0077884	zf-C2H2	PF00096.26	8.2e-27	3	5
MGP_129S1SvImJ_P0077884	zf-C2H2	PF00096.26	8.2e-27	4	5
MGP_129S1SvImJ_P0077884	zf-C2H2	PF00096.26	8.2e-27	5	5
MGP_129S1SvImJ_P0077887	zf-met	PF12874.7	1.5e-20	1	3
MGP_129S1SvImJ_P0077887	zf-met	PF12874.7	1.5e-20	2	3
MGP_129S1SvImJ_P0077887	zf-met	PF12874.7	1.5e-20	3	3
MGP_129S1SvImJ_P0077882	zf-met	PF12874.7	2.7e-20	1	3
MGP_129S1SvImJ_P0077882	zf-met	PF12874.7	2.7e-20	2	3
MGP_129S1SvImJ_P0077882	zf-met	PF12874.7	2.7e-20	3	3
MGP_129S1SvImJ_P0077885	zf-met	PF12874.7	8.9e-17	1	3
MGP_129S1SvImJ_P0077885	zf-met	PF12874.7	8.9e-17	2	3
MGP_129S1SvImJ_P0077885	zf-met	PF12874.7	8.9e-17	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_129S1SvImJ_T0077888	-	1920	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0077882	-	2155	XM_006506600	MGP_129S1SvImJ_P0077882	599 (aa)	XP_006506663	Q9CXE0
MGP_129S1SvImJ_T0077883	-	1938	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0077886	-	4126	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0077887	-	1935	-	MGP_129S1SvImJ_P0077887	579 (aa)	-	-
MGP_129S1SvImJ_T0077884	-	984	-	MGP_129S1SvImJ_P0077884	221 (aa)	-	-
MGP_129S1SvImJ_T0077885	-	1488	-	MGP_129S1SvImJ_P0077885	415 (aa)	-	-

Gene Model

Click here to download MGP_129S1SvImJ_G0030834's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_129S1SvImJ_G0030834's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_129S1SvImJ_G0030834	Prdm5	72	48.760	MGP_129S1SvImJ_G0032117	Zfp715	66	39.333
MGP_129S1SvImJ_G0030834	Prdm5	84	32.735	MGP_129S1SvImJ_G0031576	Zfp865	78	32.895
MGP_129S1SvImJ_G0030834	Prdm5	79	40.244	MGP_129S1SvImJ_G0029507	Zbtb49	96	45.070
MGP_129S1SvImJ_G0030834	Prdm5	68	42.361	MGP_129S1SvImJ_G0030700	Repin1	91	33.016
MGP_129S1SvImJ_G0030834	Prdm5	76	40.000	MGP_129S1SvImJ_G0018987	Zfp652	50	36.242
MGP_129S1SvImJ_G0030834	Prdm5	69	47.857	MGP_129S1SvImJ_G0031815	Zfp112	68	39.711
MGP_129S1SvImJ_G0030834	Prdm5	74	37.838	MGP_129S1SvImJ_G0033035	E430018J23Rik	71	37.838
MGP_129S1SvImJ_G0030834	Prdm5	73	40.562	MGP_129S1SvImJ_G0033032	Zfp768	53	43.571
MGP_129S1SvImJ_G0030834	Prdm5	84	36.545	MGP_129S1SvImJ_G0018399	Zfp867	95	36.545
MGP_129S1SvImJ_G0030834	Prdm5	90	42.609	MGP_129S1SvImJ_G0033765	Zfp882	94	35.714
MGP_129S1SvImJ_G0030834	Prdm5	76	39.796	MGP_129S1SvImJ_G0033764	Zfp709	81	39.796
MGP_129S1SvImJ_G0030834	Prdm5	74	40.104	MGP_129S1SvImJ_G0031568	Zfp628	60	38.208
MGP_129S1SvImJ_G0030834	Prdm5	81	42.941	MGP_129S1SvImJ_G0026463	Zfp661	65	42.941
MGP_129S1SvImJ_G0030834	Prdm5	67	50.847	MGP_129S1SvImJ_G0034143	Zfp1	67	40.167
MGP_129S1SvImJ_G0030834	Prdm5	68	46.154	MGP_129S1SvImJ_G0031820	Zfp108	69	37.748
MGP_129S1SvImJ_G0030834	Prdm5	68	47.826	MGP_129S1SvImJ_G0031822	Zfp61	54	41.102
MGP_129S1SvImJ_G0030834	Prdm5	74	48.913	MGP_129S1SvImJ_G0031823	Zfp94	73	48.913
MGP_129S1SvImJ_G0030834	Prdm5	82	40.076	MGP_129S1SvImJ_G0034481	Zfp872	99	40.530
MGP_129S1SvImJ_G0030834	Prdm5	83	38.679	MGP_129S1SvImJ_G0032116	Zfp141	59	36.797
MGP_129S1SvImJ_G0030834	Prdm5	77	44.643	MGP_129S1SvImJ_G0031178	Zfp637	83	46.479
MGP_129S1SvImJ_G0030834	Prdm5	75	34.545	MGP_129S1SvImJ_G0026930	Zfp64	69	31.561
MGP_129S1SvImJ_G0030834	Prdm5	91	48.387	MGP_129S1SvImJ_G0031990	Zfp420	95	41.722
MGP_129S1SvImJ_G0030834	Prdm5	86	46.739	MGP_129S1SvImJ_G0024602	Zfp236	77	35.714
MGP_129S1SvImJ_G0030834	Prdm5	74	43.846	MGP_129S1SvImJ_G0029844	Gfi1	99	45.133
MGP_129S1SvImJ_G0030834	Prdm5	73	44.286	MGP_129S1SvImJ_G0031816	Zfp235	68	39.404
MGP_129S1SvImJ_G0030834	Prdm5	68	48.544	MGP_129S1SvImJ_G0034226	Snai3	55	42.336
MGP_129S1SvImJ_G0030834	Prdm5	95	43.220	MGP_129S1SvImJ_G0023227	Zfp677	79	36.027
MGP_129S1SvImJ_G0030834	Prdm5	96	38.944	MGP_129S1SvImJ_G0023229	Zfp51	98	38.944
MGP_129S1SvImJ_G0030834	Prdm5	88	42.857	MGP_129S1SvImJ_G0018349	Zfp672	86	44.286
MGP_129S1SvImJ_G0030834	Prdm5	78	34.752	MGP_129S1SvImJ_G0033983	Zfp319	88	34.602
MGP_129S1SvImJ_G0030834	Prdm5	81	42.146	MGP_129S1SvImJ_G0020719	Zfp65	94	41.697
MGP_129S1SvImJ_G0030834	Prdm5	90	47.191	MGP_129S1SvImJ_G0026892	Zfp334	67	40.000
MGP_129S1SvImJ_G0030834	Prdm5	70	48.315	MGP_129S1SvImJ_G0023250	Zfp945	82	35.252
MGP_129S1SvImJ_G0030834	Prdm5	90	35.235	MGP_129S1SvImJ_G0023258	Zscan10	88	32.440
MGP_129S1SvImJ_G0030834	Prdm5	67	46.667	MGP_129S1SvImJ_G0031853	Zfp574	85	30.051
MGP_129S1SvImJ_G0030834	Prdm5	78	38.571	MGP_129S1SvImJ_G0018255	Zfp454	68	38.571
MGP_129S1SvImJ_G0030834	Prdm5	91	39.062	MGP_129S1SvImJ_G0022013	Zfp251	88	39.062
MGP_129S1SvImJ_G0030834	Prdm5	61	45.045	MGP_129S1SvImJ_G0026227	Wt1	55	40.876
MGP_129S1SvImJ_G0030834	Prdm5	84	36.243	MGP_129S1SvImJ_G0020716	Zfp748	92	39.735
MGP_129S1SvImJ_G0030834	Prdm5	74	40.392	MGP_129S1SvImJ_G0020717	-	95	40.392
MGP_129S1SvImJ_G0030834	Prdm5	83	38.014	MGP_129S1SvImJ_G0020699	Zfp759	94	39.262
MGP_129S1SvImJ_G0030834	Prdm5	84	43.277	MGP_129S1SvImJ_G0020698	Rslcan18	71	39.200