EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_129S1SvImJ_G0031412 (Gene tree)
Gene ID: -
Gene Symbol: Ddx47
Alias: 4930588A18Rik|C77285
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
Gene Type: protein_coding
Species: Mus_musculus_129s1svimj
Status: putative
Strand: Plus strand
Length: 13702 bases
Position: chr6:139327097-139340798
Accession: 1915005
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_129S1SvImJ_P0080602	ResIII	PF04851.15	1.1e-05	1	1
MGP_129S1SvImJ_P0080594	ResIII	PF04851.15	1.5e-05	1	1
MGP_129S1SvImJ_P0080602	DEAD	PF00270.29	1.8e-48	1	1
MGP_129S1SvImJ_P0080594	DEAD	PF00270.29	2.8e-48	1	1
MGP_129S1SvImJ_P0080601	DEAD	PF00270.29	4.3e-38	1	2
MGP_129S1SvImJ_P0080601	DEAD	PF00270.29	4.3e-38	2	2
MGP_129S1SvImJ_P0080596	DEAD	PF00270.29	1.1e-21	1	1
MGP_129S1SvImJ_P0080599	DEAD	PF00270.29	3e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_129S1SvImJ_T0080598	-	4010	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0080599	-	551	-	MGP_129S1SvImJ_P0080599	180 (aa)	-	-
MGP_129S1SvImJ_T0080602	-	1078	-	MGP_129S1SvImJ_P0080602	359 (aa)	-	-
MGP_129S1SvImJ_T0080604	-	791	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0080605	-	3186	-	MGP_129S1SvImJ_P0080605	61 (aa)	-	-
MGP_129S1SvImJ_T0080596	-	607	-	MGP_129S1SvImJ_P0080596	196 (aa)	-	-
MGP_129S1SvImJ_T0080597	-	978	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0080594	-	1764	-	MGP_129S1SvImJ_P0080594	455 (aa)	-	Q9CWX9
MGP_129S1SvImJ_T0080595	-	435	-	MGP_129S1SvImJ_P0080595	138 (aa)	-	-
MGP_129S1SvImJ_T0080603	-	693	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0080600	-	620	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0080601	-	1139	-	MGP_129S1SvImJ_P0080601	379 (aa)	-	-

Gene Model

Click here to download MGP_129S1SvImJ_G0031412's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_129S1SvImJ_G0031412's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_129S1SvImJ_G0031412	Ddx47	89	37.602	MGP_129S1SvImJ_G0016412	Ddx18	55	38.420
MGP_129S1SvImJ_G0031412	Ddx47	90	31.830	MGP_129S1SvImJ_G0033839	Ddx39	89	32.258
MGP_129S1SvImJ_G0031412	Ddx47	84	35.652	MGP_129S1SvImJ_G0025533	Ddx31	61	31.765
MGP_129S1SvImJ_G0031412	Ddx47	93	33.760	MGP_129S1SvImJ_G0020938	Ddx4	56	34.271
MGP_129S1SvImJ_G0031412	Ddx47	93	31.759	MGP_129S1SvImJ_G0034714	Ddx6	79	32.987
MGP_129S1SvImJ_G0031412	Ddx47	70	49.398	MGP_129S1SvImJ_G0034074	Ddx28	72	33.079
MGP_129S1SvImJ_G0031412	Ddx47	81	35.977	MGP_129S1SvImJ_G0030100	Ddx55	57	35.977
MGP_129S1SvImJ_G0031412	Ddx47	96	30.749	MGP_129S1SvImJ_G0019478	Eif4a3	94	32.041
MGP_129S1SvImJ_G0031412	Ddx47	85	33.333	MGP_129S1SvImJ_G0020602	Ddx41	58	35.556
MGP_129S1SvImJ_G0031412	Ddx47	84	33.141	MGP_129S1SvImJ_G0023633	Ddx39b	81	35.447
MGP_129S1SvImJ_G0031412	Ddx47	91	31.806	MGP_129S1SvImJ_G0016541	Ddx59	60	33.602
MGP_129S1SvImJ_G0031412	Ddx47	83	38.040	MGP_129S1SvImJ_G0022077	Ddx17	57	37.374
MGP_129S1SvImJ_G0031412	Ddx47	75	30.836	MGP_129S1SvImJ_G0018546	Eif4a1	91	30.836
MGP_129S1SvImJ_G0031412	Ddx47	86	38.889	MGP_129S1SvImJ_G0018018	Ddx56	99	35.887
MGP_129S1SvImJ_G0031412	Ddx47	94	30.175	MGP_129S1SvImJ_G0017303	Ddx50	59	31.266
MGP_129S1SvImJ_G0031412	Ddx47	91	34.218	MGP_129S1SvImJ_G0035068	Ddx43	59	35.678
MGP_129S1SvImJ_G0031412	Ddx47	83	32.011	MGP_129S1SvImJ_G0018863	Ddx52	58	33.428
MGP_129S1SvImJ_G0031412	Ddx47	67	36.082	MGP_129S1SvImJ_G0034133	Ddx19b	71	36.082
MGP_129S1SvImJ_G0031412	Ddx47	86	33.690	MGP_129S1SvImJ_G0035571	Ddx3x	56	34.492
MGP_129S1SvImJ_G0031412	Ddx47	95	46.050	MGP_129S1SvImJ_G0033699	Ddx49	97	49.271
MGP_129S1SvImJ_G0031412	Ddx47	86	33.690	MGP_129S1SvImJ_G0016921	D1Pas1	57	34.759
MGP_129S1SvImJ_G0031412	Ddx47	86	46.875	MGP_129S1SvImJ_G0019605	Ddx1	60	46.875
MGP_129S1SvImJ_G0031412	Ddx47	94	30.469	MGP_129S1SvImJ_G0022678	Eif4a2	94	32.637
MGP_129S1SvImJ_G0031412	Ddx47	80	37.389	MGP_129S1SvImJ_G0019313	Ddx5	71	37.457