EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_129S1SvImJ_G0031901 (Gene tree)
Gene ID: -
Gene Symbol: Snrpa
Alias: C430021M15Rik|Rnu1a-1|Rnu1a1|U1 snRNP|U1-A|U1A
Full Name: small nuclear ribonucleoprotein polypeptide A
Gene Type: protein_coding
Species: Mus_musculus_129s1svimj
Status: putative
Strand: Minus strand
Length: 10942 bases
Position: chr7:25804581-25815522
Accession: 1855690
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_129S1SvImJ_P0082451	RRM_5	PF13893.6	5.5e-07	1	2
MGP_129S1SvImJ_P0082451	RRM_5	PF13893.6	5.5e-07	2	2
MGP_129S1SvImJ_P0082452	RRM_5	PF13893.6	5.5e-07	1	2
MGP_129S1SvImJ_P0082452	RRM_5	PF13893.6	5.5e-07	2	2
MGP_129S1SvImJ_P0082453	RRM_5	PF13893.6	5.5e-07	1	2
MGP_129S1SvImJ_P0082453	RRM_5	PF13893.6	5.5e-07	2	2
MGP_129S1SvImJ_P0082451	RRM_1	PF00076.22	4.5e-28	1	2
MGP_129S1SvImJ_P0082451	RRM_1	PF00076.22	4.5e-28	2	2
MGP_129S1SvImJ_P0082452	RRM_1	PF00076.22	4.5e-28	1	2
MGP_129S1SvImJ_P0082452	RRM_1	PF00076.22	4.5e-28	2	2
MGP_129S1SvImJ_P0082453	RRM_1	PF00076.22	4.5e-28	1	2
MGP_129S1SvImJ_P0082453	RRM_1	PF00076.22	4.5e-28	2	2
MGP_129S1SvImJ_P0082454	RRM_1	PF00076.22	1.1e-18	1	2
MGP_129S1SvImJ_P0082454	RRM_1	PF00076.22	1.1e-18	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_129S1SvImJ_T0082455	-	510	-	MGP_129S1SvImJ_P0082455	44 (aa)	-	-
MGP_129S1SvImJ_T0082454	-	968	-	MGP_129S1SvImJ_P0082454	247 (aa)	-	-
MGP_129S1SvImJ_T0082456	-	1690	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0082451	-	1292	-	MGP_129S1SvImJ_P0082451	287 (aa)	-	-
MGP_129S1SvImJ_T0082450	-	513	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0082453	-	1369	-	MGP_129S1SvImJ_P0082453	287 (aa)	-	-
MGP_129S1SvImJ_T0082452	-	1340	-	MGP_129S1SvImJ_P0082452	287 (aa)	-	-

Gene Model

Click here to download MGP_129S1SvImJ_G0031901's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_129S1SvImJ_G0031901's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_129S1SvImJ_G0031901	Snrpa	70	89.000	MGP_129S1SvImJ_G0035183	Gm5145	100	89.000
MGP_129S1SvImJ_G0031901	Snrpa	97	55.235	MGP_129S1SvImJ_G0026574	Snrpb2	99	63.121