EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_129S1SvImJ_G0033839 (Gene tree)
Gene ID: -
Gene Symbol: Ddx39
Alias: 2610307C23Rik|BAT1|DDXL|Ddx39a|URH49
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39
Gene Type: protein_coding
Species: Mus_musculus_129s1svimj
Status: putative
Strand: Plus strand
Length: 12879 bases
Position: chr8:84559917-84572795
Accession: 1915528
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_129S1SvImJ_P0089599	ResIII	PF04851.15	3.1e-05	1	1
MGP_129S1SvImJ_P0089602	ResIII	PF04851.15	3.1e-05	1	1
MGP_129S1SvImJ_P0089603	ResIII	PF04851.15	3.1e-05	1	1
MGP_129S1SvImJ_P0089599	DEAD	PF00270.29	4.1e-38	1	1
MGP_129S1SvImJ_P0089602	DEAD	PF00270.29	4.1e-38	1	1
MGP_129S1SvImJ_P0089603	DEAD	PF00270.29	4.1e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_129S1SvImJ_T0089599	-	1656	XM_006531332	MGP_129S1SvImJ_P0089599	427 (aa)	XP_006531395	Q8VDW0
MGP_129S1SvImJ_T0089604	-	754	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0089601	-	1551	-	MGP_129S1SvImJ_P0089601	208 (aa)	-	-
MGP_129S1SvImJ_T0089600	-	1927	-	-	- (aa)	-	-
MGP_129S1SvImJ_T0089603	-	1794	-	MGP_129S1SvImJ_P0089603	427 (aa)	-	-
MGP_129S1SvImJ_T0089602	-	3858	-	MGP_129S1SvImJ_P0089602	427 (aa)	-	-

Gene Model

Click here to download MGP_129S1SvImJ_G0033839's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_129S1SvImJ_G0033839's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_129S1SvImJ_G0033839	Ddx39	57	35.246	MGP_129S1SvImJ_G0034133	Ddx19b	72	35.246
MGP_129S1SvImJ_G0033839	Ddx39	77	30.769	MGP_129S1SvImJ_G0034132	Ddx19a	50	30.769
MGP_129S1SvImJ_G0033839	Ddx39	84	39.655	MGP_129S1SvImJ_G0018546	Eif4a1	89	35.756
MGP_129S1SvImJ_G0033839	Ddx39	90	34.074	MGP_129S1SvImJ_G0027718	Ddx20	50	34.140
MGP_129S1SvImJ_G0033839	Ddx39	87	33.156	MGP_129S1SvImJ_G0033699	Ddx49	97	33.333
MGP_129S1SvImJ_G0033839	Ddx39	74	34.969	MGP_129S1SvImJ_G0018018	Ddx56	61	32.051
MGP_129S1SvImJ_G0033839	Ddx39	86	37.197	MGP_129S1SvImJ_G0019478	Eif4a3	89	37.197
MGP_129S1SvImJ_G0033839	Ddx39	90	30.392	MGP_129S1SvImJ_G0035571	Ddx3x	56	31.565
MGP_129S1SvImJ_G0033839	Ddx39	86	38.108	MGP_129S1SvImJ_G0022678	Eif4a2	90	38.108
MGP_129S1SvImJ_G0033839	Ddx39	89	32.258	MGP_129S1SvImJ_G0031412	Ddx47	90	31.830
MGP_129S1SvImJ_G0033839	Ddx39	85	31.183	MGP_129S1SvImJ_G0034536	Ddx25	81	31.328
MGP_129S1SvImJ_G0033839	Ddx39	77	30.769	MGP_129S1SvImJ_G0016412	Ddx18	51	30.769
MGP_129S1SvImJ_G0033839	Ddx39	96	34.223	MGP_129S1SvImJ_G0034714	Ddx6	82	34.750
MGP_129S1SvImJ_G0033839	Ddx39	100	90.888	MGP_129S1SvImJ_G0023633	Ddx39b	100	90.888
MGP_129S1SvImJ_G0033839	Ddx39	90	30.392	MGP_129S1SvImJ_G0016921	D1Pas1	57	31.565