EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_129S1SvImJ_G0034474 (Gene tree)
Gene ID: -
Gene Symbol: Elavl3
Alias: 2600009P04Rik|Huc|PLE21|mHuC
Full Name: ELAV (embryonic lethal%2C abnormal vision%2C Drosophila)-like 3 (Hu antigen C)
Gene Type: protein_coding
Species: Mus_musculus_129s1svimj
Status: putative
Strand: Minus strand
Length: 46726 bases
Position: chr9:19292218-19338943
Accession: 109157
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_129S1SvImJ_P0091484	RRM_5	PF13893.6	4.1e-13	1	2
MGP_129S1SvImJ_P0091484	RRM_5	PF13893.6	4.1e-13	2	2
MGP_129S1SvImJ_P0091484	RRM_1	PF00076.22	5.4e-64	1	3
MGP_129S1SvImJ_P0091484	RRM_1	PF00076.22	5.4e-64	2	3
MGP_129S1SvImJ_P0091484	RRM_1	PF00076.22	5.4e-64	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_129S1SvImJ_T0091484	-	5027	XM_006510021	MGP_129S1SvImJ_P0091484	367 (aa)	XP_006510084	Q60900
MGP_129S1SvImJ_T0091485	-	1014	-	MGP_129S1SvImJ_P0091485	337 (aa)	-	-

Gene Model

Click here to download MGP_129S1SvImJ_G0034474's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_129S1SvImJ_G0034474's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_129S1SvImJ_G0034474	Elavl3	90	37.179	MGP_129S1SvImJ_G0030975	Tia1	98	31.169
MGP_129S1SvImJ_G0034474	Elavl3	90	66.867	MGP_129S1SvImJ_G0033333	Elavl1	95	66.265
MGP_129S1SvImJ_G0034474	Elavl3	52	30.000	MGP_129S1SvImJ_G0017560	Celf5	91	31.765
MGP_129S1SvImJ_G0034474	Elavl3	70	39.506	MGP_129S1SvImJ_G0024209	Celf4	67	39.744
MGP_129S1SvImJ_G0034474	Elavl3	69	33.708	MGP_129S1SvImJ_G0035748	Rbmx	86	33.708
MGP_129S1SvImJ_G0034474	Elavl3	63	37.931	MGP_129S1SvImJ_G0035401	Rbms3	70	38.562
MGP_129S1SvImJ_G0034474	Elavl3	92	36.145	MGP_129S1SvImJ_G0021796	Pabpc1	58	36.145
MGP_129S1SvImJ_G0034474	Elavl3	73	40.741	MGP_129S1SvImJ_G0025332	Celf2	82	34.667
MGP_129S1SvImJ_G0034474	Elavl3	62	37.500	MGP_129S1SvImJ_G0017486	Cirbp	79	37.500
MGP_129S1SvImJ_G0034474	Elavl3	92	33.735	MGP_129S1SvImJ_G0028739	Pabpc4	94	31.061
MGP_129S1SvImJ_G0034474	Elavl3	59	30.488	MGP_129S1SvImJ_G0026834	Pabpc1l	63	38.889
MGP_129S1SvImJ_G0034474	Elavl3	92	36.145	MGP_129S1SvImJ_G0023139	Pabpc6	62	36.145
MGP_129S1SvImJ_G0034474	Elavl3	69	33.708	MGP_129S1SvImJ_G0033806	-	66	33.708
MGP_129S1SvImJ_G0034474	Elavl3	50	36.207	MGP_129S1SvImJ_G0025764	Rbms1	51	33.645
MGP_129S1SvImJ_G0034474	Elavl3	71	42.391	MGP_129S1SvImJ_G0026137	Celf1	57	43.590
MGP_129S1SvImJ_G0034474	Elavl3	100	78.400	MGP_129S1SvImJ_G0028445	Elavl2	100	79.292
MGP_129S1SvImJ_G0034474	Elavl3	80	41.975	MGP_129S1SvImJ_G0034902	Celf6	57	42.308
MGP_129S1SvImJ_G0034474	Elavl3	90	37.179	MGP_129S1SvImJ_G0033083	Tial1	73	37.179
MGP_129S1SvImJ_G0034474	Elavl3	89	34.940	MGP_129S1SvImJ_G0027553	Celf3	98	35.632
MGP_129S1SvImJ_G0034474	Elavl3	90	34.940	MGP_129S1SvImJ_G0024369	Pabpc2	61	34.940
MGP_129S1SvImJ_G0034474	Elavl3	99	80.323	MGP_129S1SvImJ_G0028576	Elavl4	99	79.893
MGP_129S1SvImJ_G0034474	Elavl3	90	36.145	MGP_129S1SvImJ_G0027190	Pabpc4l	96	36.145